View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0782_high_18 (Length: 266)
Name: NF0782_high_18
Description: NF0782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0782_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 38984510 - 38984671
Alignment:
| Q |
22 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttca |
121 |
Q |
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| T |
38984510 |
catcatcacccgttccaaaaagggtatttcaaaaccaaaagttttagacccttagttgtc-agggaatgtcttcttttgctcctgtgtaaaagggcttca |
38984608 |
T |
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| Q |
122 |
gcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc |
184 |
Q |
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||||| |||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||| |
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| T |
38984609 |
gcaggtaaaagaataataggttgcaacatgctaatagtacaatcacaattggaattcaaactc |
38984671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 10582937 - 10583134
Alignment:
| Q |
22 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttca |
121 |
Q |
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|||||||||||||||||||| ||||||||| || ||||||||||| |||||||||||||| ||||||||||||| || |||||||||||||||||||||| |
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| T |
10582937 |
catcatcacccgttccaaaatgggtatttccaaaccaaaagttttggaaccttagttgtctagggaatgtcttccttcgctcctgtgtaaaagggtttca |
10583036 |
T |
|
| Q |
122 |
gcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactcatttttaaaaggagtttcccaaagacatcgccaagta |
221 |
Q |
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| T |
10583037 |
gcag--aaaaaaagaataggctgcagcaatctaaaggtacaaacacaaatggcgttcaaactcattctaaaaaggaggttcccatagacatcaccaagta |
10583134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 356911 - 357020
Alignment:
| Q |
22 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttca |
121 |
Q |
| |
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| T |
356911 |
catcaacacccgttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatgtcttccttcgctcctgtgtaaaagggtttca |
357010 |
T |
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| Q |
122 |
gcaggaaaaa |
131 |
Q |
| |
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| || ||||| |
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| T |
357011 |
gaagaaaaaa |
357020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 50249232 - 50249155
Alignment:
| Q |
22 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttctttt |
99 |
Q |
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| T |
50249232 |
catcatcacccgttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttgtctagggaatgtcttctttt |
50249155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 16465542 - 16465650
Alignment:
| Q |
22 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttca |
121 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | || |||||| ||||||| || ||| ||||||||||||| |
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| T |
16465542 |
catcatcactcgttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttggctagtaaatgtcctcttttgttcttgtataaaagggtttca |
16465641 |
T |
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| Q |
122 |
gcaggaaaa |
130 |
Q |
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||||||||| |
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| T |
16465642 |
gcaggaaaa |
16465650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 50248405 - 50248348
Alignment:
| Q |
127 |
aaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc |
184 |
Q |
| |
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|||||||| ||||| |||||||| ||||| ||||||| |||||||||||| |||||| |
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| T |
50248405 |
aaaaagaagtataggctgcaacaatctaacggtacaaatacaaatggaatttaaactc |
50248348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 6762618 - 6762518
Alignment:
| Q |
111 |
aaagggtttcagcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactcatttttaaaaggagtttcccaaagac |
210 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| || | | |||||| || |||||||| |
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| T |
6762618 |
aaagggtttcagcaggaaaaagaagaataggttgcaacaagctaacggtacaaacacaaatggaatttgaactcgttctcagaaggaggttaccaaagac |
6762519 |
T |
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| Q |
211 |
a |
211 |
Q |
| |
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| |
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|
| T |
6762518 |
a |
6762518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 1265451 - 1265396
Alignment:
| Q |
22 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagt |
77 |
Q |
| |
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||||||||||||||| ||||| || ||| |||| ||||||||||||||||| |||| |
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| T |
1265451 |
catcatcacccgttctaaaaacggcattacaaaaccaaaagttttagaaccgtagt |
1265396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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