View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0782_high_4 (Length: 496)
Name: NF0782_high_4
Description: NF0782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0782_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 27669418 - 27669277
Alignment:
| Q |
134 |
gaagaaatgaagggaccatattgtaacaaaaataattacaattaaagttgtagtcatgtgattcaatgactttttacacgtgaaacaaatattagaggaa |
233 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27669418 |
gaagaaatggagggaccatattgtaacaaaaataattacaattaaagttgtagtcatgtgattcaatgactttttacacgtgaaacaaatattagaggat |
27669319 |
T |
|
| Q |
234 |
taattgtattcttatatcttgttgtcatcaaaatcaaaattg |
275 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27669318 |
taattatattcttataccttgttgtcatcaaaatcaaaattg |
27669277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 27669267 - 27669218
Alignment:
| Q |
435 |
ttgtgtttcgttcatactcaccatcgagtagttacccaaaggttgcccta |
484 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27669267 |
ttgtgtttcattcatactcaacatcgagtagttacccaaaggttgcccta |
27669218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 27669521 - 27669480
Alignment:
| Q |
37 |
cttcctttaagttgaaaggggaacattataattatcattaat |
78 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27669521 |
cttcctttaagttgaaagggaaacattataattatcattaat |
27669480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 12146242 - 12146204
Alignment:
| Q |
151 |
atattgtaacaaaaataattacaattaaagttgtagtca |
189 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12146242 |
atattgtgacaaaaataattacaattaaagttgtagtca |
12146204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 8067682 - 8067718
Alignment:
| Q |
151 |
atattgtaacaaaaataattacaattaaagttgtagt |
187 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8067682 |
atattgtgacaaaaataattacaattaaagttgtagt |
8067718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 24857761 - 24857816
Alignment:
| Q |
258 |
tcatcaaaa-tcaaaattggaggtcattgtttttaaaacaattttggttcaacaag |
312 |
Q |
| |
|
||||||||| |||||||| || |||||||||||| |||| |||||||||||||||| |
|
|
| T |
24857761 |
tcatcaaaactcaaaattagatgtcattgtttttcaaaccattttggttcaacaag |
24857816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6304 times since January 2019
Visitors: 5767