View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0782_low_10 (Length: 432)

Name: NF0782_low_10
Description: NF0782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0782_low_10
NF0782_low_10
[»] chr7 (9 HSPs)
chr7 (40-215)||(23081796-23081971)
chr7 (266-365)||(23082997-23083096)
chr7 (266-344)||(10038959-10039037)
chr7 (266-341)||(9564117-9564192)
chr7 (316-352)||(10658102-10658138)
chr7 (316-352)||(42635966-42636002)
chr7 (361-391)||(23083398-23083428)
chr7 (269-341)||(4794814-4794886)
chr7 (319-351)||(20597097-20597129)
[»] chr6 (3 HSPs)
chr6 (266-341)||(21323497-21323572)
chr6 (316-352)||(24501543-24501579)
chr6 (316-352)||(28623241-28623277)
[»] chr8 (3 HSPs)
chr8 (269-352)||(24850660-24850743)
chr8 (316-352)||(9996218-9996254)
chr8 (310-365)||(23864733-23864788)
[»] chr4 (4 HSPs)
chr4 (314-352)||(33737703-33737741)
chr4 (316-352)||(33745687-33745723)
chr4 (310-351)||(2679705-2679746)
chr4 (316-348)||(9068669-9068701)
[»] chr2 (1 HSPs)
chr2 (316-353)||(26863352-26863389)
[»] chr3 (2 HSPs)
chr3 (316-352)||(18476647-18476683)
chr3 (316-352)||(6581212-6581248)
[»] scaffold0008 (1 HSPs)
scaffold0008 (316-348)||(40055-40087)
[»] chr5 (1 HSPs)
chr5 (266-306)||(22131057-22131097)
[»] chr1 (1 HSPs)
chr1 (316-352)||(12752780-12752816)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 23081796 - 23081971
Alignment:
Q  40 gtgttaatttcaaagtaggtttgttgagaagctttcctttccgaccatgctaaggtaaacttcttaacaaaccgggtatagtccctcttgctaatgtaat 139  Q
    ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| |||||||||||  |||||||||||||||    
T  23081796 gtgttaatttcaaagtaggtttgttgagatgctttcctttccgagcttgctaaggtaaacttcttaacaaatcgggtatagtcattcttgctaatgtaat 23081895  T
Q  140 tctggcatatcaacctacttagaccatccacaacagagcacctcacataacctctttagtccctagagagatcatg 215  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  23081896 tgtggcatatcaacctacttagaccatccacaacagagcaccccacataacctctttagtccctagagagagcatg 23081971  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 23082997 - 23083096
Alignment:
Q  266 ctgctagcacgatgttctaaacatcacactcagcatctgtattctgtgtttgatgttgcaacatcgtataaaacatctgaaagctagtgcgccagcattt 365  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23082997 ctgctagcacgatgttcaaaaaatcacactcagcatctgtattttgtgtttgatgttgcaacatcgtataaaacatctgaaagctagtgcgtcagcattt 23083096  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 10038959 - 10039037
Alignment:
Q  266 ctgctagcacgatgttctaaacatcacactcagcatctgtattctgtgtttgatgttgcaacatcgtataaaacatctg 344  Q
    |||||||||||||||||||||||| ||| ||| |||  ||||| ||||| |||||||| |||||||||||||| |||||    
T  10038959 ctgctagcacgatgttctaaacattacattcaacattcgtattttgtgtctgatgttggaacatcgtataaaaaatctg 10039037  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 9564192 - 9564117
Alignment:
Q  266 ctgctagcacgatgttctaaacatcacactcagcatctgtattctgtgtttgatgttgcaacatcgtataaaacat 341  Q
    ||||||||||||||||||||||||| || ||| |||||||  |||||| ||| ||||| ||||||| ||| |||||    
T  9564192 ctgctagcacgatgttctaaacatctcattcaacatctgttatctgtgcttggtgttggaacatcgcatagaacat 9564117  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 10658138 - 10658102
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||| ||||||||||||||||||||||||||||    
T  10658138 tgatgttgaaacatcgtataaaacatctgaaagctag 10658102  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 42636002 - 42635966
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||| ||||||||||||||||||||||||||||    
T  42636002 tgatgttgaaacatcgtataaaacatctgaaagctag 42635966  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 391
Target Start/End: Original strand, 23083398 - 23083428
Alignment:
Q  361 catttagtattctctctagacaaacacccct 391  Q
    |||||||||||||||||||||||||||||||    
T  23083398 catttagtattctctctagacaaacacccct 23083428  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 4794814 - 4794886
Alignment:
Q  269 ctagcacgatgttctaaacatcacactcagcatctgtattctgtgtttgatgttgcaacatcgtataaaacat 341  Q
    |||||||||||||||||||||| || ||| |||||||  | ||||| || ||||| ||||||| ||| |||||    
T  4794814 ctagcacgatgttctaaacatctcattcaacatctgttatttgtgtctggtgttggaacatcgcatagaacat 4794886  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 20597097 - 20597129
Alignment:
Q  319 tgttgcaacatcgtataaaacatctgaaagcta 351  Q
    ||||| |||||||||||||||||||||||||||    
T  20597097 tgttgaaacatcgtataaaacatctgaaagcta 20597129  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 21323497 - 21323572
Alignment:
Q  266 ctgctagcacgatgttctaaacatcacactcagcatctgtattctgtgtttgatgttgcaacatcgtataaaacat 341  Q
    |||||||||||||||||||||||| ||||||| |||| ||| |||||||||| ||||| ||||||| ||| |||||    
T  21323497 ctgctagcacgatgttctaaacattacactcaacatccgtaatctgtgtttggtgttggaacatcgcatagaacat 21323572  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 24501579 - 24501543
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  24501579 tgatgttgaaacatcgtataaaacgtctgaaagctag 24501543  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 28623277 - 28623241
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  28623277 tgatgttgaaacatcgtataaaacatttgaaagctag 28623241  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 24850660 - 24850743
Alignment:
Q  269 ctagcacgatgttctaaacatcacactcagcatctgtattctgtgtttgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    ||||||||||||| ||||||| ||| ||| ||||  || | ||||| |||||||| |||||||||||||| ||||| |||||||    
T  24850660 ctagcacgatgttgtaaacattacattcaacatccttaatttgtgtctgatgttggaacatcgtataaaatatctgtaagctag 24850743  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 9996254 - 9996218
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9996254 tgatgttgaaacatcgtataaaacatctgaaagctag 9996218  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 23864733 - 23864788
Alignment:
Q  310 tgtgtttgatgttgcaacatcgtataaaacatctgaaagctagtgcgccagcattt 365  Q
    ||||| |||||||| |||||||||||||||||| | |||||||| |||||| ||||    
T  23864733 tgtgtctgatgttgaaacatcgtataaaacatcaggaagctagtccgccagaattt 23864788  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 352
Target Start/End: Complemental strand, 33737741 - 33737703
Alignment:
Q  314 tttgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33737741 tttgatgttgaaacatcgtataaaacatctgaaagctag 33737703  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 33745723 - 33745687
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33745723 tgatgttgaaacatcgtataaaacatctgaaagctag 33745687  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 2679746 - 2679705
Alignment:
Q  310 tgtgtttgatgttgcaacatcgtataaaacatctgaaagcta 351  Q
    ||||| || ||||| |||||||||||||||||||||||||||    
T  2679746 tgtgtctggtgttgaaacatcgtataaaacatctgaaagcta 2679705  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 9068701 - 9068669
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaag 348  Q
    |||||||| ||||||||||||||||||||||||    
T  9068701 tgatgttgaaacatcgtataaaacatctgaaag 9068669  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 26863352 - 26863389
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctagt 353  Q
    |||||||| |||||||||||||||||||||||||||||    
T  26863352 tgatgttgaaacatcgtataaaacatctgaaagctagt 26863389  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 18476683 - 18476647
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||| ||||||||||||||||||||||||||||    
T  18476683 tgatgttgaaacatcgtataaaacatctgaaagctag 18476647  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 6581212 - 6581248
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  6581212 tgatgttgaaacatcgtataaaacatatgaaagctag 6581248  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 40087 - 40055
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaag 348  Q
    |||||||| ||||||||||||||||||||||||    
T  40087 tgatgttgaaacatcgtataaaacatctgaaag 40055  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 22131057 - 22131097
Alignment:
Q  266 ctgctagcacgatgttctaaacatcacactcagcatctgta 306  Q
    ||||||||||||||||||||||||| || ||| ||||||||    
T  22131057 ctgctagcacgatgttctaaacatctcattcaacatctgta 22131097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 12752816 - 12752780
Alignment:
Q  316 tgatgttgcaacatcgtataaaacatctgaaagctag 352  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  12752816 tgatgttgaaacatcgtataaaacatcttaaagctag 12752780  T

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