View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0782_low_11 (Length: 417)
Name: NF0782_low_11
Description: NF0782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0782_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 9697476 - 9697854
Alignment:
| Q |
19 |
catcaaggggaagactatcaaacagatacagtaggtattcaaaagggaatgtattactgacatgctgcttagatggaactgctaggttatggagtgaggt |
118 |
Q |
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| T |
9697476 |
catcaaggggaagactatcaaacagatacagtaggtattcaaaagggaatgtattactgacatgctgcttagatggaactgctaggttatggagtgaggt |
9697575 |
T |
|
| Q |
119 |
tgataatggaaagaccaagagggctgggaagaacacagggtcctctttttgtgttgttgctgttattgagattagtcagtgtttaaatggaactcttggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9697576 |
tgataatggaaagaccaagagggctgggaagaacacagggtcctctttttgtgttgttgctgttattgagattagtcagtgtttaaatggaactcttggt |
9697675 |
T |
|
| Q |
219 |
tcagatatatttgtgatgtggggtacggaaattgaggggttatttagaagaggcgaaggagacaaacaaattttttccaacgaagaatttgagcacgacg |
318 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9697676 |
tcagatatatttgtgatgtggggtacggaaattgtggggttatttagaagaggtgaaggagacaaacaaattttttccaacgaagaatttgagcacgacg |
9697775 |
T |
|
| Q |
319 |
tgagaaagtgtgatttgttagttggatatggtcctggaatgttgcttagcttttgggctgtccactgtcttgatgatgt |
397 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9697776 |
tgagaaagtgtgattggttagttggatatggtcctggaatgttgcttagcttttgggctgtccactgtcttgatgatgt |
9697854 |
T |
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