View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0782_low_23 (Length: 273)
Name: NF0782_low_23
Description: NF0782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0782_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 23411047 - 23411245
Alignment:
| Q |
1 |
acacctgcgtcccatcagaagccccatccaaaccccacctccgcttccccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaa |
100 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23411047 |
acacccgcgtcccatcagaagcaccatccaaaccccacctccgcttccccaaatccacctgcgacttcacctccacccacctccacctcccctcccacaa |
23411146 |
T |
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| Q |
101 |
gaaaaacaaccgtttctggtcctcacgcgattggaacaacaaactccattccttctcccgtctcttcctccatattcgcaatctcggtcttcttcctaa |
199 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23411147 |
gaaaaacaaccgtctctggtcctcacgcgattggaacaacaaactccattccttctcccgtctcttcctccatattcgcaatctcggtcttcttcctaa |
23411245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 16538434 - 16538551
Alignment:
| Q |
30 |
aaaccccacctccgcttccccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaagaaaaacaaccgtttctggtcctcacgcg |
129 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
16538434 |
aaaccccacttccgcttccctaaatccacctgcgacttcacctcctcccgccccagcctcccctccgacaagaaaaacaaccgtctctggtcctcacgcg |
16538533 |
T |
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| Q |
130 |
attggaacaacaaactcc |
147 |
Q |
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| T |
16538534 |
actggaacaacaaactcc |
16538551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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