View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0782_low_24 (Length: 272)
Name: NF0782_low_24
Description: NF0782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0782_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 45692944 - 45693149
Alignment:
| Q |
31 |
gagatgaatgagaactttctctagaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttc |
130 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45692944 |
gagaagaatgagaactttttctagaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttc |
45693043 |
T |
|
| Q |
131 |
ttgataagattccttccccaaatgaagagaaacaatggtagacaagtcatttgaatcgtaatatgtcaaccaattaactgtgccacttatgaatattccc |
230 |
Q |
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| T |
45693044 |
ttgataagattccttccccaaatgaagagaaacaatggtagacaagtcatttgaatcgtaatatgtcaaccaattaactgtgccacttatgaatattccc |
45693143 |
T |
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| Q |
231 |
aggtga |
236 |
Q |
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| |||| |
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| T |
45693144 |
atgtga |
45693149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 24233489 - 24233652
Alignment:
| Q |
53 |
agaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttcttgataagattccttccccaaa |
152 |
Q |
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|||||||||||||||||| |||||||| | | |||| ||| ||| | ||||| |||| ||||||| | |||||||||||||||||||||||||||||| |
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| T |
24233489 |
agaaaatatgcacaagcactccctcatcatatccaaagtcgacaaaaaaaaatctccagaatcaggaactggtatttcttgataagattccttccccaaa |
24233588 |
T |
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| Q |
153 |
tgaagagaaacaatggtagacaagtcatttgaatcgtaatatgtcaaccaattaactgtgccac |
216 |
Q |
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| T |
24233589 |
tgaagagaaacaatgacacccaagtcacttgagttataataagtcaaccaattcactgtgccac |
24233652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 24242927 - 24243043
Alignment:
| Q |
53 |
agaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttcttgataagattccttccccaaa |
152 |
Q |
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| T |
24242927 |
agaaaataggcacaagaaatcccgcatcacacccatggtcaacctaacaaaatctccataatcaggctgtgaaatatcttggtaagattctttccccaaa |
24243026 |
T |
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| Q |
153 |
tgaagagaaacaatggt |
169 |
Q |
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| T |
24243027 |
tcaagagaaacaatggt |
24243043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 25611036 - 25611164
Alignment:
| Q |
53 |
agaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttcttgataagattccttccccaaa |
152 |
Q |
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||||||||||||||| || || ||||| ||||||||| |||| | |||||||| |||| |||||| || ||||||| ||||||||| ||||| ||| |
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| T |
25611036 |
agaaaatatgcacaaacaatctctcatcacacccaagttcaatttctcaaaattcccatgatcaggatgcgaaatttcttcataagattctttccctaaa |
25611135 |
T |
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| Q |
153 |
tgaagagaaacaatggtagacaagtcatt |
181 |
Q |
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|||||||||||||||| | ||||| |||| |
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| T |
25611136 |
tgaagagaaacaatggcatacaagccatt |
25611164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 25478770 - 25478731
Alignment:
| Q |
129 |
tcttgataagattccttccccaaatgaagagaaacaatgg |
168 |
Q |
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||||||||||| || ||||||||||||||||||||||||| |
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| T |
25478770 |
tcttgataagactctttccccaaatgaagagaaacaatgg |
25478731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 1421236 - 1421360
Alignment:
| Q |
44 |
actttctctagaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtatttcttgataagattcc |
143 |
Q |
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|||||||| |||||| ||||||||||| |||||||| ||||||||||| ||| ||| | ||||||||||| ||| |||||| ||||||||||||||| |
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| T |
1421236 |
actttctcgagaaaaaatgcacaagcaatccctcatcacacccaaggttaacttattcagatttccataatgaggttgcggtatctcttgataagattcc |
1421335 |
T |
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| Q |
144 |
ttccccaaatgaagagaaacaatgg |
168 |
Q |
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||||||||||||||||||||||||| |
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| T |
1421336 |
ttccccaaatgaagagaaacaatgg |
1421360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 1421391 - 1421430
Alignment:
| Q |
190 |
aatatgtcaaccaattaactgtgccacttatgaatattcc |
229 |
Q |
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||||||||||||||||||| |||||||||| ||||||||| |
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| T |
1421391 |
aatatgtcaaccaattaaccgtgccacttacgaatattcc |
1421430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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