View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0782_low_33 (Length: 249)
Name: NF0782_low_33
Description: NF0782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0782_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 23411047 - 23411211
Alignment:
| Q |
1 |
acacctgcgtcccatcagaagccccatccaaaccccacctccgcttccccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaa |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23411047 |
acacccgcgtcccatcagaagcaccatccaaaccccacctccgcttccccaaatccacctgcgacttcacctccacccacctccacctcccctcccacaa |
23411146 |
T |
|
| Q |
101 |
gaaaaacaaccgtttctggtcctcacgcgattggaacaacaaactccattccttctcccgtctct |
165 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23411147 |
gaaaaacaaccgtctctggtcctcacgcgattggaacaacaaactccattccttctcccgtctct |
23411211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 16538434 - 16538551
Alignment:
| Q |
30 |
aaaccccacctccgcttccccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaagaaaaacaaccgtttctggtcctcacgcg |
129 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
16538434 |
aaaccccacttccgcttccctaaatccacctgcgacttcacctcctcccgccccagcctcccctccgacaagaaaaacaaccgtctctggtcctcacgcg |
16538533 |
T |
|
| Q |
130 |
attggaacaacaaactcc |
147 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
16538534 |
actggaacaacaaactcc |
16538551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5913 times since January 2019
Visitors: 5761