View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0782_low_6 (Length: 466)
Name: NF0782_low_6
Description: NF0782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0782_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 29 - 399
Target Start/End: Original strand, 34249095 - 34249465
Alignment:
| Q |
29 |
atcagcactagccaatcatcattcccaaacactaggtatcccttatatcattaatgttgttatcatggttatgaatactcgcgtttgtttgattttgcag |
128 |
Q |
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| T |
34249095 |
atcagcactagctaatcatcattcacaaacactaggtatcccttatatcattaatgttgttatcatggttatgaatactcgcgtgtgtttgattttgcag |
34249194 |
T |
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| Q |
129 |
cgataaaaattaattctagttaaaagtaagttgcactgttccttgaacatacctcagttcatacggacatagcaatatgcagtgtcagagttcgaaccct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |
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| T |
34249195 |
cgataaaaattaattctagttaaaagtaagttgcactgttccttgaacatacctcagttcgtagggacatagcaatatgcaatgtcagagttcgaaccct |
34249294 |
T |
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| Q |
229 |
cgtggtgaatttctaggcaccaggctacttgatnnnnnnntacactgcatatgttagtacatatgcatgtataatgtatgataaaatgtcacataaaaag |
328 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34249295 |
cgtggtgaatttctaggcactaggctacttgataaaaaaatacactgcatatgttagtacatatgcatgtataatgtatgataaaatgtcacataaaaag |
34249394 |
T |
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| Q |
329 |
ggacaatttggtattgttacttaaggatagtatacttatttgcaatctttccttaggactcttatattgtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34249395 |
ggacaatttggtattgttacttaaggatagtatacttatttgcaatcttttcttaggactcttatattgtt |
34249465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 34258216 - 34258286
Alignment:
| Q |
29 |
atcagcactagccaatcatcattcccaaacactaggtatcccttatatcattaatgttgttatcatggtta |
99 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34258216 |
atcagcactagtcaatcatcattcccaaacactaggtatcccttacatcattaatgttgttatcatggtta |
34258286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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