View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0783-Insertion-1 (Length: 1156)

Name: NF0783-Insertion-1
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0783-Insertion-1
NF0783-Insertion-1
[»] chr8 (3 HSPs)
chr8 (250-914)||(1425454-1426115)
chr8 (7-257)||(1424795-1425052)
chr8 (977-1042)||(1426173-1426239)
[»] chr2 (4 HSPs)
chr2 (454-651)||(2816374-2816572)
chr2 (15-76)||(25475651-25475712)
chr2 (106-176)||(41898804-41898874)
chr2 (813-874)||(26032096-26032156)
[»] chr3 (4 HSPs)
chr3 (106-176)||(50061157-50061227)
chr3 (35-112)||(50058020-50058096)
chr3 (35-112)||(28095338-28095414)
chr3 (210-255)||(50061276-50061321)
[»] chr7 (2 HSPs)
chr7 (15-82)||(39363782-39363849)
chr7 (23-112)||(29442848-29442936)
[»] chr1 (4 HSPs)
chr1 (106-176)||(2415032-2415102)
chr1 (106-179)||(52986393-52986466)
chr1 (213-262)||(52986515-52986564)
chr1 (786-874)||(41516924-41517012)
[»] chr4 (1 HSPs)
chr4 (829-866)||(19274632-19274669)
[»] scaffold0118 (2 HSPs)
scaffold0118 (210-262)||(18761-18813)
scaffold0118 (106-169)||(18643-18706)


Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 250 - 914
Target Start/End: Original strand, 1425454 - 1426115
Alignment:
Q  250 tattattattagtcatgtccattaagttagaataacctatatataagtacattatttgtctttgaattatatattcagttttcacagtaaacaacgttaa 349  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1425454 tattattatcagtcatgtccattaagttagaataacctatatataagtacattatttgtctttgaattatatattcagttttcacattaaacaacgttaa 1425553  T
Q  350 ttagcttcccctttggtgcaatagctagtaagatgggttggagcgggaacaggaaacaagatcattaatttaccgacacttttcctgtgattttcttt-- 447  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||      
T  1425554 ttagcttcccctttggtgcaa----tagtaagatgggttggagcgggaacaggaaacaagatcattaatttaccaacacttttcctttgattttctttct 1425649  T
Q  448 ---ccttctatttttgtatatatgaaatgaaattatatatcatgtgattatgtggttattgttctaataaaagattccannnnnnnnnnnngaagaaata 544  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||    
T  1425650 aggccttctatttttgtatatatgaaatgaaattatatatcatgtgattatgtggttattgttctaataaaagattcca---tttgtttttgaagaaata 1425746  T
Q  545 ccatcctatgcgagcattcacaatctgttaccagccatttgcactaataacaacattgatattggctcactacgaggcaaggatcaatacaagtttgcgg 644  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1425747 ccatcctatgcgagcatttacaatctgttaccagccatttgcactaataacaacattgatattggctcactacgagtcaaggatcaatacaagtttgcgg 1425846  T
Q  645 aacttatatggatatgcacnnnnnnnngttctctctttcttggtcattgttgtaagtacatctttctttccatcaattatttttgctttacctagtttac 744  Q
    |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1425847 aacttatatggatatgcacttttttttgttctctctttcttggtcattgttgtaagtacatctttctttccatcaattatttttgctttacctagtttac 1425946  T
Q  745 ttgtgttctgtaaaggagtgaatgtatggttttactttccaaggtgtaaaattcattttgacaccttctattgttctcgagtttaattgattttaccttt 844  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  1425947 ttgtgctctgtaaagtagtgaatgtatggttttactttccaaggtgtaaaattcattttgacaccttctattattcttgagtttaattgattttaccttt 1426046  T
Q  845 aaaattgattataacttgaagtaagaatttacaactttgggtgtgatagttgggttctagcaacatcagg 914  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||    
T  1426047 aaaattgattataacttgaagtaagaatttacaactttggatatgatagtt-ggatctagcaacatcagg 1426115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 1424795 - 1425052
Alignment:
Q  7 atctatcacttataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcc 106  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1424795 atctatcacttataactgtagcaggttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcc 1424894  T
Q  107 taatttgcactccctatatctcttcccaaagtaatctagcagatcttctaactaagagactgaacaacaagaatttaaagagaattcctttcaagctg-- 204  Q
    ||||||||||||| |||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1424895 taatttgcactccgtatatctcttc------taatctagcagatcttctaactaagagactgaacaacaagaatttaaagagaattcctttcaagctggt 1424988  T
Q  205 -----------tcattaccagcttgaggtggagtgttgtaaatagtgaaattttaatattatta 257  Q
               || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1424989 aataatagatatctttaccagcttgaggtggagtgttgtaaatagtgaaattttaatattatta 1425052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 977 - 1042
Target Start/End: Original strand, 1426173 - 1426239
Alignment:
Q  977 tgcacatgctcttgatcaaggtggcgtctctagaagactatcttctatgtgt-ctgagttcattcag 1042  Q
    |||||||||||||| |||||| ||||||||| ||  |||||||||||||||| ||||||||||||||    
T  1426173 tgcacatgctcttgttcaagggggcgtctctggagaactatcttctatgtgtcctgagttcattcag 1426239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 454 - 651
Target Start/End: Complemental strand, 2816572 - 2816374
Alignment:
Q  454 atttttgtatatatgaaatgaaattatatatcatgtgattatgt----ggttattgttctaataaaagattccannnnnnnnnnnngaagaaataccatc 549  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    ||||||| ||||||||||| | ||||            ||||||||||||||    
T  2816572 atttttgtacatatgaaattaaattatatatcatgtgattatgtatgaggttatttttctaataaaatactccattttt-------gaagaaataccatc 2816480  T
Q  550 ctat----gcgagcattcacaatctgttaccagccatttgcactaataacaacattgatattggctcactacgaggcaaggatcaatacaagtttgcgga 645  Q
    ||||    |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||| || ||||| ||||||| |||||||    
T  2816479 ctatatatgcgagcattcacaatcagttatcagccatttgcacttataacaacattgatattggctcactatgagtcatggatcgatacaaggttgcgga 2816380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 25475712 - 25475651
Alignment:
Q  15 cttataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgt 76  Q
    ||||||| ||||||| |||||||||||||||||||||   ||||||||||||||||||||||    
T  25475712 cttataattgtagcaggttaaggaaatgtccaaataagatcaactataatcctacaaaatgt 25475651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 41898804 - 41898874
Alignment:
Q  106 ctaatttgcactccctatatctcttcccaaagtaatctagcagatcttctaactaagagactgaacaacaa 176  Q
    |||||||||||||| ||| ||||||||||| | || || |||||||||||||| ||| | |||||||||||    
T  41898804 ctaatttgcactccatatgtctcttcccaaggcaaccttgcagatcttctaacaaaggggctgaacaacaa 41898874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 813 - 874
Target Start/End: Complemental strand, 26032156 - 26032096
Alignment:
Q  813 tattgttctcgagtttaattgattttacctttaaaattgattataacttgaagtaagaattt 874  Q
    ||||| |||| ||| ||||||||| |||||||| |||||||||| ||||||||| |||||||    
T  26032156 tattgctctcaagtataattgattctacctttagaattgattat-acttgaagttagaattt 26032096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 50061157 - 50061227
Alignment:
Q  106 ctaatttgcactccctatatctcttcccaaagtaatctagcagatcttctaactaagagactgaacaacaa 176  Q
    |||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| |||||||||||||    
T  50061157 ctaatttgcactccatatatctcttcccaaggcaatcttgcagatcttctaactaagggactgaacaacaa 50061227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 50058020 - 50058096
Alignment:
Q  35 aggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaattt 112  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| | ||| ||||| ||||||||||||||||||    
T  50058020 aggaaatgtccaaataagcccaactataatcctagaaaatgtccttc-atattcccaaattgtccactagcctaattt 50058096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 28095414 - 28095338
Alignment:
Q  35 aggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaattt 112  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||| | ||| ||||| || |||||||||||||||    
T  28095414 aggaaatgtccagataagcccaactataatcctacaaaatatccttc-atattcccaaattgcccactagcctaattt 28095338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 50061276 - 50061321
Alignment:
Q  210 accagcttgaggtggagtgttgtaaatagtgaaattttaatattat 255  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||    
T  50061276 accagcttgagggggagtgttgtaaatagtgaagttttactattat 50061321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 39363849 - 39363782
Alignment:
Q  15 cttataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttca 82  Q
    ||||||||||||||| || |||||||||||||||||| |||| |||||||||||||||| ||| ||||    
T  39363849 cttataactgtagcaggtaaaggaaatgtccaaataagcccatctataatcctacaaaacgtctttca 39363782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 29442936 - 29442848
Alignment:
Q  23 tgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaattt 112  Q
    |||||||  |||||||||| ||||||||||| |||||||| |||||||||||||||||  | |||  ||||||||| |||||||||||||    
T  29442936 tgtagcagattaaggaaatttccaaataaacacaactatagtcctacaaaatgtcctt-tatattcgcaaaatgtcaactagcctaattt 29442848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 2415032 - 2415102
Alignment:
Q  106 ctaatttgcactccctatatctcttcccaaagtaatctagcagatcttctaactaagagactgaacaacaa 176  Q
    |||||||||||||| ||| |||||||||||   || || |||||||||||||| ||||| |||||||||||    
T  2415032 ctaatttgcactccatatgtctcttcccaagacaaccttgcagatcttctaacaaagaggctgaacaacaa 2415102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 52986393 - 52986466
Alignment:
Q  106 ctaatttgcactccctatatctcttcccaaagtaatctagcagatcttctaactaagagactgaacaacaagaa 179  Q
    |||||||||||||| || |||||||||||| | ||||| |||||| |||||||||||  | |||||||| ||||    
T  52986393 ctaatttgcactccatagatctcttcccaaggcaatcttgcagatattctaactaaggtattgaacaacgagaa 52986466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 52986515 - 52986564
Alignment:
Q  213 agcttgaggtggagtgttgtaaatagtgaaattttaatattattattagt 262  Q
    ||||||||| |||||||||||||||||||| |||||  ||||||||||||    
T  52986515 agcttgagggggagtgttgtaaatagtgaagttttacaattattattagt 52986564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 786 - 874
Target Start/End: Original strand, 41516924 - 41517012
Alignment:
Q  786 aggtgtaaaattcattttgacaccttctattgttctcgagtttaattgattttacctttaaaattgattataacttgaagtaagaattt 874  Q
    ||||||| |||| ||| ||||| |||  | |||| ||||||  |||||||||| | ||||||||||||| ||||||||||| |||||||    
T  41516924 aggtgtagaattgattatgacatcttggaatgttttcgagtagaattgattttgcgtttaaaattgattctaacttgaagttagaattt 41517012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 829 - 866
Target Start/End: Complemental strand, 19274669 - 19274632
Alignment:
Q  829 aattgattttacctttaaaattgattataacttgaagt 866  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  19274669 aattgattttacctttaaaattgattataacttaaagt 19274632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 18761 - 18813
Alignment:
Q  210 accagcttgaggtggagtgttgtaaatagtgaaattttaatattattattagt 262  Q
    ||||||||| || ||||||||||||||| |||| ||||| |||||||||||||    
T  18761 accagcttgtgggggagtgttgtaaatattgaagttttactattattattagt 18813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 18643 - 18706
Alignment:
Q  106 ctaatttgcactccctatatctcttcccaaagtaatctagcagatcttctaactaagagactga 169  Q
    |||||||||||||| |||| |||||||||| | ||||| | | ||||||||||||| |||||||    
T  18643 ctaatttgcactccatatacctcttcccaaggcaatcttgaaaatcttctaactaaaagactga 18706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4580 times since January 2019
Visitors: 5751