View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0783-Insertion-10 (Length: 464)

Name: NF0783-Insertion-10
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0783-Insertion-10
NF0783-Insertion-10
[»] chr5 (14 HSPs)
chr5 (7-371)||(29596864-29597229)
chr5 (104-294)||(29593634-29593822)
chr5 (371-464)||(29820884-29820975)
chr5 (63-207)||(29648149-29648294)
chr5 (63-229)||(29642927-29643094)
chr5 (63-147)||(29820576-29820661)
chr5 (371-464)||(29642646-29642737)
chr5 (312-367)||(29648008-29648063)
chr5 (62-99)||(29593574-29593611)
chr5 (420-456)||(29597298-29597334)
chr5 (371-464)||(29593898-29593990)
chr5 (371-403)||(29597271-29597303)
chr5 (313-367)||(29820765-29820819)
chr5 (371-447)||(28763580-28763654)
[»] chr6 (1 HSPs)
chr6 (371-458)||(387050-387131)
[»] chr7 (1 HSPs)
chr7 (417-464)||(19325709-19325756)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 29596864 - 29597229
Alignment:
Q  7 aaataatgaatgcatcagtcgcaagagctcagtatgtaacgaagtaaatttgtgcaaacaaatttaaacttcaatacgatacaaaacgctcaccatttgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29596864 aaataatgaatgcatcagtcgcaagagctcagtatgtaacgaagtaaatttgtgcaaacaaatttaaacttcaatacgatacaaaacgctcaccatttgc 29596963  T
Q  107 aaattttgaagcaaattgaattaatataagtttgaagaaatnnnnnnnctctggcttttccttttctcatctcagtaatgatttatagataataaatctt 206  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29596964 aaattttgaagcaaattgaattaatataagtttgaagaaataaaaaaactctggcttttccttttctcatctcagtaatgatttatagataataaatctt 29597063  T
Q  207 tttaagtcttctatcaaaaacaaatatttccaagtctaaatgggaaatttttcactttcccattgacatgtttcctgctttaacctttgaaagactaata 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29597064 tttaagtcttctatcaaaaacaaatatttccaagtctaaatgggaaatatttcactttcccattgacatgtttcctgctttaacctttgaaagactaata 29597163  T
Q  307 ttccag-tacaataatataaaaacaaaacaattgtattcaatctagatattactaaacacttggga 371  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29597164 ttccagttacattaatataaaaacaaaacaattgtattcaatctagatattaccaaacacttggga 29597229  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 104 - 294
Target Start/End: Original strand, 29593634 - 29593822
Alignment:
Q  104 tgcaaattttgaagcaaattgaattaatataagtttgaagaaatnnnnnnnctctggcttttccttttctcatctcagtaa-tgatttatagataataaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||| | |||||||||| |||||||||||| |||| |||||||||||||    
T  29593634 tgcaaattttgaagcaaattgaattaatataagtttgaagaaataaaacaactcttgtttttccttttgtcatctcagtaattgatctatagataataaa 29593733  T
Q  203 tctttttaagtcttctatcaaaaacaaatatttccaagtctaaatgggaaatttttcactttcccattgacatgtttcctgctttaaccttt 294  Q
    | ||| ||||||||||| |||||||||| |||||||||||||||||    | || ||| ||||||||||||||||||||| |||||||||||    
T  29593734 tatttctaagtcttctaccaaaaacaaagatttccaagtctaaatg---tacttgtcattttcccattgacatgtttcctcctttaaccttt 29593822  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 371 - 464
Target Start/End: Original strand, 29820884 - 29820975
Alignment:
Q  371 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatcattctaaagaaacttactt 464  Q
    |||||||||||||||||||| || |||||||||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||    
T  29820884 aatcttttactatgaaatgatatagatttcaaaataacata--catgaattcaaataaattcgaacaagtaaatcattgtaaagaaacttactt 29820975  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 29648294 - 29648149
Alignment:
Q  63 aacaaatttaaacttcaatacgatacaaaa-cgctcaccatttgcaaattttgaagcaaattgaattaatataagtttgaagaaatnnnnnnnctctggc 161  Q
    ||||||||| ||||| ||||| |||||||| |||||||||| |||||||||||||||||||  | |||||||||| ||||||||||        |||||     
T  29648294 aacaaatttgaactttaatacaatacaaaaacgctcaccatctgcaaattttgaagcaaatgcatttaatataaggttgaagaaataaaataattctggt 29648195  T
Q  162 ttttccttttctcatctcagtaatgatttatagataataaatcttt 207  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||    
T  29648194 ttttccttttctcatctcagtaatgatctagtgataataaatcttt 29648149  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 29643094 - 29642927
Alignment:
Q  63 aacaaatttaaacttcaatacgatacaaaa-cgctcaccatttgcaaattttgaagcaaattgaattaatataagtttgaagaaatnnnnnnnctctggc 161  Q
    ||||| ||| ||||||||||| |||||||| |||||||||| |||||||||||||||| ||  |||||||||||||||||||||||        ||||      
T  29643094 aacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattttgaagcagatgcaattaatataagtttgaagaaataaaataattctgat 29642995  T
Q  162 ttttccttttctcatctcagtaatgatttatagataataaatctttttaagtcttctatcaaaaacaa 229  Q
    |||||||||||| |||| ||||||||| | | ||||||||| ||||| ||||||| || |||||||||    
T  29642994 ttttccttttctaatcttagtaatgatctgttgataataaaacttttcaagtcttataccaaaaacaa 29642927  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 29820576 - 29820661
Alignment:
Q  63 aacaaatttaaacttcaatacgatacaaaa-cgctcaccatttgcaaattttgaagcaaattgaattaatataagtttgaagaaat 147  Q
    ||||| ||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  29820576 aacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattttgaagcaaatggaattaatataagtttgaagaaat 29820661  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 371 - 464
Target Start/End: Complemental strand, 29642737 - 29642646
Alignment:
Q  371 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatcattctaaagaaacttactt 464  Q
    ||||| |||||||||||| | | ||||||||||||||||||  || ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  29642737 aatctattactatgaaattataaggatttcaaaataacata--catgaattcaaataaatttgaacaagtaaatcattgtaaagaaacttactt 29642646  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 367
Target Start/End: Complemental strand, 29648063 - 29648008
Alignment:
Q  312 gtacaataatataaaaacaaaacaattgtattcaatctagatattactaaacactt 367  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||    
T  29648063 gtacaataatataataacaaaacaattttattcaatctagatattaccaaacactt 29648008  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 29593574 - 29593611
Alignment:
Q  62 aaacaaatttaaacttcaatacgatacaaaacgctcac 99  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29593574 aaacaaatttaaacttcaatacgatacaaaacgctcac 29593611  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 456
Target Start/End: Original strand, 29597298 - 29597334
Alignment:
Q  420 ttcaaataaattcgaacaagtaaatcattctaaagaa 456  Q
    |||||||||||||||||||||||||||||||||||||    
T  29597298 ttcaaataaattcgaacaagtaaatcattctaaagaa 29597334  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 464
Target Start/End: Original strand, 29593898 - 29593990
Alignment:
Q  371 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaat-cattctaaagaaacttactt 464  Q
    |||||| ||||| ||||||||||||||| |||||||||  || || |||||  |||||||| ||||| |||||| |||| |||||||||||||||    
T  29593898 aatcttatactacgaaatgacatggattccaaaataac--atgcatgaatttgaataaatttgaacaggtaaatccattgtaaagaaacttactt 29593990  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 29597271 - 29597303
Alignment:
Q  371 aatcttttactatgaaatgacatggatttcaaa 403  Q
    |||||||||||||||||||||||||||||||||    
T  29597271 aatcttttactatgaaatgacatggatttcaaa 29597303  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 29820765 - 29820819
Alignment:
Q  313 tacaataatataaaaacaaaacaattgtattcaatctagatattactaaacactt 367  Q
    ||||| ||||||| ||||||||||||  |||||||||||||||||  ||||||||    
T  29820765 tacaacaatataataacaaaacaatttgattcaatctagatattatcaaacactt 29820819  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 28763580 - 28763654
Alignment:
Q  371 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatcat 447  Q
    ||||||||| || | ||||||| ||||||||||| || ||   ||| ||||||||||||||| ||||||||||||||    
T  28763580 aatcttttattaagtaatgacaaggatttcaaaacaaaatg--caacaattcaaataaattcaaacaagtaaatcat 28763654  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 387050 - 387131
Alignment:
Q  371 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatcattctaaagaaac 458  Q
    ||||||||||||||||||||||||||||||||||| ||||      ||||||||  ||||||||||||||||||| || |||||||||    
T  387050 aatcttttactatgaaatgacatggatttcaaaatgacat------gaattcaagcaaattcgaacaagtaaatcgttgtaaagaaac 387131  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 19325709 - 19325756
Alignment:
Q  417 gaattcaaataaattcgaacaagtaaatcattctaaagaaacttactt 464  Q
    ||||||||| ||||| |||||||||||||||  |||||||||||||||    
T  19325709 gaattcaaacaaattggaacaagtaaatcatcataaagaaacttactt 19325756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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