View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0783-Insertion-11 (Length: 458)
Name: NF0783-Insertion-11
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783-Insertion-11 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 263 - 458
Target Start/End: Original strand, 8449133 - 8449328
Alignment:
| Q |
263 |
aatgtggaaccccgtttgttgatgaatcataattcccaccaccattcactaacacaagacaacatcattagcacaaccctatacatgtccgtttcttata |
362 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449133 |
aatggggaaccccgtttgttgatgaatcataattcccaccaccattcactaacacaagacaacatcattagcacaaccctatacatgtccgtttcttata |
8449232 |
T |
|
| Q |
363 |
tacccttgcttgcttcatcaaactcaagccctaccctattcatgtgttttttcttttaccttatcaaagccaaactctcgtcataatcatttgttt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
8449233 |
tacccttgcttgcttcatcaaactcaagccctaccctattcatgtgttttttcttttaccttatcaaaaccaaactctcatcataatcatttgttt |
8449328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 8448871 - 8449056
Alignment:
| Q |
8 |
attacgtcactcccatccttattaacctagtaatgactattttattctccttaagtcagaaacctaagcatgcattctgttgtt-ctctgaaaaattagc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8448871 |
attacgtcactcccatccttattaacctagtaatgactattttattctccttaagtcagaaacctaagcatgcattctgttgtttctctgaaaaattagc |
8448970 |
T |
|
| Q |
107 |
acattctgtttccttcaaaagtcgtttttgattgttttatacatgtcattaactggttagataagttaattaattaacttatctag |
192 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8448971 |
acattctgtttccttcaaaagttgtttttgattgttttatacatgtcattaactggttagataagttaattaattaacttatctag |
8449056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 32227000 - 32226944
Alignment:
| Q |
304 |
ccattcactaacacaagacaacatcattagcacaaccctatacatgtccgtttctta |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
32227000 |
ccattcactaacacaagacaacatcattaaaacaagcctctacctgtccgtttctta |
32226944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4619 times since January 2019
Visitors: 5751