View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0783-Insertion-17 (Length: 101)
Name: NF0783-Insertion-17
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783-Insertion-17 |
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| [»] chr2 (7 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 2e-46; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-46
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 410181 - 410274
Alignment:
| Q |
8 |
ctaatgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagct |
101 |
Q |
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| T |
410181 |
ctaatgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagct |
410274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 1403189 - 1403282
Alignment:
| Q |
8 |
ctaatgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagct |
101 |
Q |
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| T |
1403189 |
ctaatgactttcctacattccataatttgactcatctggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagct |
1403282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 1399484 - 1399577
Alignment:
| Q |
8 |
ctaatgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagct |
101 |
Q |
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| T |
1399484 |
ctaatgacttttctacattccataatttgactcatctggtgctcaactatagctgtgatataattgtacaagtgctccaccattgccctaagct |
1399577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 821078 - 821168
Alignment:
| Q |
11 |
atgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagct |
101 |
Q |
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| T |
821078 |
atgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtatgggtgctccaccattgccctaagct |
821168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 965550 - 965511
Alignment:
| Q |
62 |
gggatatagttgtacaagtgctccaccattgccctaagct |
101 |
Q |
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| T |
965550 |
gggatatagttgttcaagtgctccatcattgccctaagct |
965511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 974096 - 974057
Alignment:
| Q |
62 |
gggatatagttgtacaagtgctccaccattgccctaagct |
101 |
Q |
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| T |
974096 |
gggatatagttgttcaagtgctccatcattgccctaagct |
974057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 982187 - 982134
Alignment:
| Q |
40 |
catttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgc |
93 |
Q |
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| T |
982187 |
catttggtgctcaactatgattggaatatagttgtacgagtgctccaccattgc |
982134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 45810622 - 45810532
Alignment:
| Q |
11 |
atgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagct |
101 |
Q |
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| T |
45810622 |
atgactttcctacattcaataatttgactcatttggtggtcaactatgattgggatatagttgtacaagtgcttcagcattgtcctaagct |
45810532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 10116870 - 10116796
Alignment:
| Q |
24 |
attccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaa |
98 |
Q |
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| T |
10116870 |
attccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaa |
10116796 |
T |
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