View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0783-Insertion-3 (Length: 788)

Name: NF0783-Insertion-3
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0783-Insertion-3
NF0783-Insertion-3
[»] chr7 (11 HSPs)
chr7 (410-561)||(36514453-36514602)
chr7 (450-561)||(48736145-48736256)
chr7 (448-521)||(14593684-14593757)
chr7 (450-547)||(39811882-39811979)
chr7 (400-520)||(5335797-5335917)
chr7 (448-558)||(37617867-37617977)
chr7 (448-521)||(16013207-16013280)
chr7 (448-551)||(47848597-47848700)
chr7 (448-518)||(30200248-30200318)
chr7 (448-558)||(34869343-34869453)
chr7 (448-558)||(45836729-45836839)
[»] chr8 (17 HSPs)
chr8 (400-551)||(13171905-13172056)
chr8 (457-561)||(32043522-32043626)
chr8 (450-520)||(16252860-16252930)
chr8 (448-546)||(16351313-16351411)
chr8 (400-561)||(39953510-39953671)
chr8 (411-484)||(42493627-42493700)
chr8 (448-520)||(41972062-41972133)
chr8 (401-526)||(39760705-39760830)
chr8 (400-487)||(44681396-44681483)
chr8 (449-551)||(2518648-2518749)
chr8 (490-560)||(9695596-9695666)
chr8 (448-526)||(29520583-29520661)
chr8 (450-520)||(30748384-30748454)
chr8 (448-558)||(36395199-36395309)
chr8 (448-526)||(39051065-39051143)
chr8 (428-521)||(10080191-10080284)
chr8 (403-460)||(30578581-30578638)
[»] chr5 (17 HSPs)
chr5 (718-788)||(40954048-40954118)
chr5 (400-521)||(21952226-21952347)
chr5 (450-519)||(6368213-6368282)
chr5 (449-561)||(10082985-10083096)
chr5 (451-521)||(14667683-14667753)
chr5 (450-520)||(33006587-33006657)
chr5 (445-521)||(5305536-5305612)
chr5 (450-522)||(21093701-21093773)
chr5 (468-521)||(683978-684031)
chr5 (402-479)||(14748957-14749034)
chr5 (402-561)||(3097052-3097209)
chr5 (448-520)||(11002708-11002780)
chr5 (399-519)||(28186956-28187075)
chr5 (492-561)||(33667185-33667252)
chr5 (448-521)||(2075760-2075833)
chr5 (448-513)||(21362763-21362828)
chr5 (443-496)||(27998341-27998394)
[»] chr1 (16 HSPs)
chr1 (400-561)||(40419514-40419675)
chr1 (450-521)||(40920823-40920894)
chr1 (395-561)||(18793234-18793400)
chr1 (400-561)||(26016312-26016473)
chr1 (446-518)||(4590813-4590885)
chr1 (448-551)||(9509241-9509344)
chr1 (448-493)||(7814387-7814432)
chr1 (448-561)||(16943098-16943211)
chr1 (410-526)||(52442785-52442901)
chr1 (415-558)||(9599643-9599786)
chr1 (450-561)||(39422288-39422398)
chr1 (448-558)||(1210668-1210778)
chr1 (448-551)||(1661349-1661456)
chr1 (411-521)||(4379891-4380001)
chr1 (448-506)||(34827403-34827461)
chr1 (452-521)||(17815402-17815470)
[»] chr6 (9 HSPs)
chr6 (450-561)||(33083983-33084094)
chr6 (448-521)||(5129123-5129196)
chr6 (448-525)||(12134183-12134260)
chr6 (448-508)||(10617525-10617584)
chr6 (395-561)||(6641655-6641824)
chr6 (400-557)||(7513641-7513793)
chr6 (430-526)||(33998285-33998381)
chr6 (393-519)||(7080003-7080129)
chr6 (448-521)||(9593998-9594071)
[»] chr4 (19 HSPs)
chr4 (452-557)||(44047598-44047703)
chr4 (416-561)||(54470098-54470243)
chr4 (445-560)||(45423539-45423650)
chr4 (428-513)||(31403314-31403399)
chr4 (445-508)||(290092-290155)
chr4 (450-561)||(17900405-17900516)
chr4 (448-515)||(18966476-18966543)
chr4 (448-547)||(35690227-35690326)
chr4 (400-561)||(10775668-10775829)
chr4 (448-513)||(40933190-40933255)
chr4 (449-513)||(2588905-2588969)
chr4 (449-513)||(21106908-21106972)
chr4 (456-561)||(44360014-44360123)
chr4 (490-561)||(36557275-36557346)
chr4 (455-526)||(51841472-51841543)
chr4 (448-558)||(12494673-12494783)
chr4 (448-558)||(31960063-31960173)
chr4 (448-558)||(56375213-56375323)
chr4 (448-513)||(20105765-20105830)
[»] chr3 (13 HSPs)
chr3 (445-561)||(36820207-36820321)
chr3 (448-521)||(46568039-46568112)
chr3 (446-520)||(38054624-38054698)
chr3 (448-558)||(54278943-54279053)
chr3 (453-558)||(344960-345065)
chr3 (452-512)||(3365008-3365068)
chr3 (490-561)||(3987012-3987083)
chr3 (448-518)||(2341003-2341073)
chr3 (450-508)||(11663574-11663632)
chr3 (448-561)||(50249304-50249420)
chr3 (448-558)||(52138723-52138833)
chr3 (445-558)||(28245357-28245470)
chr3 (428-513)||(49841514-49841599)
[»] chr2 (9 HSPs)
chr2 (448-561)||(38434874-38434987)
chr2 (448-504)||(45077671-45077727)
chr2 (490-561)||(13240991-13241062)
chr2 (451-519)||(9556656-9556724)
chr2 (450-561)||(4598808-4598921)
chr2 (448-558)||(36183374-36183484)
chr2 (448-558)||(38429807-38429917)
chr2 (448-561)||(42092442-42092553)
chr2 (448-521)||(7825281-7825354)
[»] scaffold0018 (1 HSPs)
scaffold0018 (448-509)||(44169-44230)


Alignment Details
Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 36514602 - 36514453
Alignment:
Q  410 ggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaat 509  Q
    ||||||||||||||||  |||||||||||| | | || ||||||||||||||||||| ||||||| ||||| || |||  ||||||||||||| |||||     
T  36514602 ggtaaagaaccaacacgaaaataaattaagtgtagcagagatgaggatgttgcgttggatgtgtggtaagactaaacgggatagaattagaaaggacaac 36514503  T
Q  510 attaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    |||  ||||||| |||| | ||||| |||| ||||||||||| |||||||||    
T  36514502 att--agagagagttggggtagcacctatagtagaaaagatggtagaaacta 36514453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 48736256 - 48736145
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaaga 549  Q
    ||||||||||||||||||||||||| ||||| |||| || ||| ||||||||||||| | |||| ||||||| |||| | ||||| || | |||||||||    
T  48736256 atgaggatgttgcgttgaatgtgtggtaagactagatgagataaaattagaaatgacgacattatagagagagttggggtagcacctacagtagaaaaga 48736157  T
Q  550 tgatagaaacta 561  Q
    ||  ||||||||    
T  48736156 tgggagaaacta 48736145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 448 - 521
Target Start/End: Original strand, 14593684 - 14593757
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    ||||||||||||||||||| ||||||| ||||| ||||||  |  |||||||||||||||| |||| |||||||    
T  14593684 agatgaggatgttgcgttggatgtgtggtaagactagacggaaccgaattagaaatgacaacattagagagaga 14593757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 39811882 - 39811979
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||| ||| ||||||| ||||| ||||||  |||| |||||||||||||| |||| ||||||| |||| | ||||| |||  |||||||    
T  39811882 atgaggatgttgctttggatgtgtggtaagactagacgtgataggattagaaatgacaacattagagagagagttggggcagcacctatcatagaaaa 39811979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 520
Target Start/End: Original strand, 5335797 - 5335917
Alignment:
Q  400 agtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattag 499  Q
    |||||||| |||||||||||   |||| | |||| ||||| | | || ||||||||||||||||||||||||||| ||||| |||||   ||  ||||||    
T  5335797 agtgttgggcggtaaagaacgggcacaaacataagttaagtgtagcagagatgaggatgttgcgttgaatgtgtggtaagactagacagaatgcaattag 5335896  T
Q  500 aaatgacaatattaaagagag 520  Q
    |||||| || |||| ||||||    
T  5335897 aaatgataacattagagagag 5335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 37617867 - 37617977
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| ||||| | |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  37617867 agatgaggatgttgcgttggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaa 37617966  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  37617967 gttggtagaaa 37617977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 521
Target Start/End: Original strand, 16013207 - 16013280
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    ||||||||||||||||||| ||||||| ||||| ||||||  |   ||||||||||||||| |||| |||||||    
T  16013207 agatgaggatgttgcgttggatgtgtggtaagactagacggaaccaaattagaaatgacaacattagagagaga 16013280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 551
Target Start/End: Original strand, 47848597 - 47848700
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    |||||||||||||| |||| ||||||| ||||| ||||||  |||| || |||| ||| || |||| ||||||| |||| | ||| | |||| |||||||    
T  47848597 agatgaggatgttgtgttggatgtgtggtaagactagacgggataggatcagaagtgataacattagagagagagttggggtagcgcctatagtagaaaa 47848696  T
Q  548 gatg 551  Q
    ||||    
T  47848697 gatg 47848700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 518
Target Start/End: Complemental strand, 30200318 - 30200248
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagag 518  Q
    |||||||||||||| |||| ||||||| |||||||||| |  |||  |||||||||||||| |||| ||||    
T  30200318 agatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacattagagag 30200248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 34869343 - 34869453
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| |||||   |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  34869343 agatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaa 34869442  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  34869443 gttggtagaaa 34869453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Complemental strand, 45836839 - 45836729
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    |||||||||||||||| || ||| ||| ||||| ||||| | |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  45836839 agatgaggatgttgcgctggatgagtggtaagagtagacaagataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaa 45836740  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  45836739 gttggtagaaa 45836729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 400 - 551
Target Start/End: Complemental strand, 13172056 - 13171905
Alignment:
Q  400 agtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattag 499  Q
    |||||||| |||| ||||||||||| | ||||||||||||  ||||| ||||||| ||||||| ||| ||||||  ||||| ||||||  |||| |||||    
T  13172056 agtgttgggcggttaagaaccaacataaaaataaattaagcacatcagagatgagaatgttgcattggatgtgtagtaagactagacgggataggattag 13171957  T
Q  500 aaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatg 551  Q
    ||||||||| |||| ||||||| |||| | ||||| |||| |||||||||||    
T  13171956 aaatgacaagattagagagagagttggggaagcacctatagtagaaaagatg 13171905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 457 - 561
Target Start/End: Original strand, 32043522 - 32043626
Alignment:
Q  457 tgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgataga 556  Q
    |||||||||| ||||||| ||||| ||||||  ||||||||||||||||||| |||| ||||||| |||| | | ||| |||| || |||||||| ||||    
T  32043522 tgttgcgttggatgtgtggtaagactagacgggatagaattagaaatgacaacattagagagagagttggggtatcacctatagtacaaaagatggtaga 32043621  T
Q  557 aacta 561  Q
    |||||    
T  32043622 aacta 32043626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 520
Target Start/End: Original strand, 16252860 - 16252930
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagag 520  Q
    |||||||||||| |||| ||||||| |||||||||| || ||| ||||||||||||||| |||| ||||||    
T  16252860 atgaggatgttgtgttggatgtgtggtaagattagatgagataaaattagaaatgacaacattagagagag 16252930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 546
Target Start/End: Original strand, 16351313 - 16351411
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaa 546  Q
    |||||| |||||||||||| || |||| ||||| ||||||  ||||| ||||||||||||| |||| |||||||||| | | ||||| |||| ||||||    
T  16351313 agatgaagatgttgcgttggatatgtggtaagactagacggaatagagttagaaatgacaacattagagagagaattagggtagcacctatagtagaaa 16351411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 400 - 561
Target Start/End: Complemental strand, 39953671 - 39953510
Alignment:
Q  400 agtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattag 499  Q
    |||||||  |||||||||||||||||  | ||||| | || | | || ||||||| ||||||||||| ||||||| |||||||| ||   ||| ||||||    
T  39953671 agtgttgagcggtaaagaaccaacacgaacataaagttagcgtagcagagatgagaatgttgcgttggatgtgtggtaagattaaacatgatataattag 39953572  T
Q  500 aaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    |||| |  | |||| ||||||| ||||   ||||| ||||| |||||||||| |||||||||    
T  39953571 aaataatgacattagagagagagttgggatagcacctatatgagaaaagatggtagaaacta 39953510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 411 - 484
Target Start/End: Complemental strand, 42493700 - 42493627
Alignment:
Q  411 gtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattag 484  Q
    ||||||||||||||   |||||||||||| | | ||||||||||||||||||||||  |||||| |||||||||    
T  42493700 gtaaagaaccaacaagaaaataaattaagtgtagcaaagatgaggatgttgcgttggttgtgtggtaagattag 42493627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 520
Target Start/End: Complemental strand, 41972133 - 41972062
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagag 520  Q
    ||||||||||||||  ||| |||||||||||||||| | || |||||||||||||||| ||||||| ||||||    
T  41972133 agatgaggatgttgtattggatgtgtgataagatta-atgagatagaattagaaatgagaatattagagagag 41972062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 526
Target Start/End: Complemental strand, 39760830 - 39760705
Alignment:
Q  401 gtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattaga 500  Q
    |||||||||||||||||||||| ||   || |||| ||| | | || |||||||||||||| |||| ||||||| || |||||||| | |||| | ||||    
T  39760830 gtgttggacggtaaagaaccaatacgagaaaaaatgaagtgtagcagagatgaggatgttgtgttggatgtgtggtaggattagacaagataggagtaga 39760731  T
Q  501 aatgacaatattaaagagagaattgg 526  Q
    ||||| || |||| ||| ||| ||||    
T  39760730 aatgataacattagagacagagttgg 39760705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 487
Target Start/End: Complemental strand, 44681483 - 44681396
Alignment:
Q  400 agtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacg 487  Q
    |||||||||| || ||||||||||| | ||||||| ||||  || || ||||||||||||||  ||| ||||||| ||||| ||||||    
T  44681483 agtgttggacagtcaagaaccaacaaaaaaataaaataagcacaacatagatgaggatgttgtattggatgtgtggtaagactagacg 44681396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 551
Target Start/End: Complemental strand, 2518749 - 2518648
Alignment:
Q  449 gatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaag 548  Q
    |||||| ||||||| ||| ||||||| ||||| |||| || |||| |||||||||||||| |||| ||||| |||||| | ||||| |  | ||||||||    
T  2518749 gatgagaatgttgcattggatgtgtggtaagactagatgagataggattagaaatgacaa-attagagagaaaattggggtagcacctcaagtagaaaag 2518651  T
Q  549 atg 551  Q
    |||    
T  2518650 atg 2518648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 560
Target Start/End: Original strand, 9695596 - 9695666
Alignment:
Q  490 atagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaact 560  Q
    ||||||||||||||||||| |||| ||||| | |||| | ||||| |||| ||||||||||| | ||||||    
T  9695596 atagaattagaaatgacaacattatagagatatttggggtagcacctatagtagaaaagatggtggaaact 9695666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 526
Target Start/End: Original strand, 29520583 - 29520661
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattgg 526  Q
    ||||||||||||||||||| ||||||| ||||| |||| |  |||| ||||||||||| |  |||| ||||||| ||||    
T  29520583 agatgaggatgttgcgttggatgtgtggtaagactagatgggataggattagaaatgataccattagagagagagttgg 29520661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 520
Target Start/End: Original strand, 30748384 - 30748454
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagag 520  Q
    ||||||||||| ||||| ||||||| | |||||||||   |||| |||||||||||||| |||| ||||||    
T  30748384 atgaggatgtttcgttggatgtgtggttagattagacatgataggattagaaatgacaacattacagagag 30748454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Complemental strand, 36395309 - 36395199
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| |||||   |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  36395309 agatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaa 36395210  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  36395209 gttggtagaaa 36395199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 526
Target Start/End: Original strand, 39051065 - 39051143
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattgg 526  Q
    |||||||||||||| |||  ||||||| |||||  ||||   |||||||||||||||||||||||  ||||||| ||||    
T  39051065 agatgaggatgttgtgttagatgtgtggtaagacaagacatgatagaattagaaatgacaatattcgagagagagttgg 39051143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 521
Target Start/End: Complemental strand, 10080284 - 10080191
Alignment:
Q  428 aaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    |||||||||||  |  ||| |||||| ||||||||||||  ||| || ||||| ||||||| |||  |||||||||||||| |||| |||||||    
T  10080284 aaataaattaactgtgtcatagatgatgatgttgcgttgggtgtttggtaagactagacgagataagattagaaatgacaacattagagagaga 10080191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 460
Target Start/End: Complemental strand, 30578638 - 30578581
Alignment:
Q  403 gttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgtt 460  Q
    |||||||||| ||||||||| ||| ||||||| ||||   ||||||||||||||||||    
T  30578638 gttggacggtgaagaaccaatacaaaaataaaataagcatatcaaagatgaggatgtt 30578581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 718 - 788
Target Start/End: Original strand, 40954048 - 40954118
Alignment:
Q  718 tttgattcatgtagctgatattatttagtgggataaaacttagttgatgttgtaacacagtatgattttca 788  Q
    |||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  40954048 tttgattcatgtagctgacatcatttagtgagataaaatttagttgatgttgtaacacagtatgattttca 40954118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 400 - 521
Target Start/End: Original strand, 21952226 - 21952347
Alignment:
Q  400 agtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattag 499  Q
    |||||||| || | ||||||||||||  |  ||||||||| | |  ||||||||||||||||||||| ||||||| ||||| ||||||| |||  |||||    
T  21952226 agtgttgggcgcttaagaaccaacacgaacttaaattaagtgtagaaaagatgaggatgttgcgttgcatgtgtggtaagactagacgagataagattag 21952325  T
Q  500 aaatgacaatattaaagagaga 521  Q
    ||||||||  ||||||||||||    
T  21952326 aaatgacagcattaaagagaga 21952347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 519
Target Start/End: Complemental strand, 6368282 - 6368213
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagaga 519  Q
    ||||||||||||||||  ||||||| ||||| ||||||| ||||||||||||||||||| ||| ||||||    
T  6368282 atgaggatgttgcgttagatgtgtggtaagaatagacgagatagaattagaaatgacaacattgaagaga 6368213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 449 - 561
Target Start/End: Complemental strand, 10083096 - 10082985
Alignment:
Q  449 gatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaag 548  Q
    |||||||||||||| |||| |||||| ||||| ||||||  |||||||||||||||| || ||||  ||||| ||||| | | ||| |||| ||||||||    
T  10083096 gatgaggatgttgctttga-tgtgtggtaagactagacgggatagaattagaaatgagaacattagggagagcattggggtatcacctatagtagaaaag 10082998  T
Q  549 atgatagaaacta 561  Q
    ||| |||||||||    
T  10082997 atggtagaaacta 10082985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 521
Target Start/End: Original strand, 14667683 - 14667753
Alignment:
Q  451 tgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    |||||| |||| |||| ||||||||||||| |||| ||  ||||||||||||||||||||||| |||||||    
T  14667683 tgaggaagttgtgttggatgtgtgataagactagatgaggtagaattagaaatgacaatattagagagaga 14667753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 520
Target Start/End: Original strand, 33006587 - 33006657
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagag 520  Q
    |||||||||||| |||||||||||  ||||||||||||| ||| ||||| ||||||||| |||| ||||||    
T  33006587 atgaggatgttgtgttgaatgtgttctaagattagacgagataaaattaaaaatgacaacattagagagag 33006657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 521
Target Start/End: Original strand, 5305536 - 5305612
Alignment:
Q  445 caaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    |||||| | ||||||||||||| ||||||| ||||| ||||| | |||||||||||||| |||| |||| |||||||    
T  5305536 caaagacggggatgttgcgttggatgtgtggtaagactagacaagatagaattagaaataacaacattagagagaga 5305612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 21093701 - 21093773
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaa 522  Q
    ||||||||||||||||| ||||||| ||||| |||| |  || ||||||||||||||||||||| ||| ||||    
T  21093701 atgaggatgttgcgttgtatgtgtggtaagactagatgtgatggaattagaaatgacaatattagagaaagaa 21093773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 521
Target Start/End: Complemental strand, 684031 - 683978
Alignment:
Q  468 atgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    ||||||| ||||| |||| || |||||||||||||||||||||||| |||||||    
T  684031 atgtgtggtaagactagatgagatagaattagaaatgacaatattagagagaga 683978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 14748957 - 14749034
Alignment:
Q  402 tgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataag 479  Q
    |||||| || ||||||||||||||| | |||| ||||| ||| || ||||||||||||||| ||| ||||||| ||||    
T  14748957 tgttgggcgttaaagaaccaacacaaacataagttaagcgcaacagagatgaggatgttgcattggatgtgtggtaag 14749034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 402 - 561
Target Start/End: Original strand, 3097052 - 3097209
Alignment:
Q  402 tgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaa 501  Q
    |||||||||||||| |||||||||  | || || |||| |   || ||| ||||||||| ||||| |||||| |||| | |||| || ||| ||||| ||    
T  3097052 tgttggacggtaaataaccaacacgaacattaagtaagtgtgacagagacgaggatgttacgttggatgtgttataaaactagatgagataaaattaaaa 3097151  T
Q  502 atgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    ||||| | |||| ||||||  |||| | | ||| |||||||||||||||| |||||||||    
T  3097152 atgacgacattatagagag--ttggggtaacacctatattagaaaagatgctagaaacta 3097209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 448 - 520
Target Start/End: Complemental strand, 11002780 - 11002708
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagag 520  Q
    |||||||||||||||| || ||||||| |||||  ||| |  ||||||||||||||||||| |||| ||||||    
T  11002780 agatgaggatgttgcgctggatgtgtggtaagacgagatgggatagaattagaaatgacaacattagagagag 11002708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 519
Target Start/End: Complemental strand, 28187075 - 28186956
Alignment:
Q  399 tagtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaatta 498  Q
    ||||||||| |||||| |||||||||||  || ||| ||||  ||||| ||||||| ||||||| ||| ||||||| ||||| |||||    ||| ||||    
T  28187075 tagtgttgggcggtaa-gaaccaacacaagaacaaaataagcacatcagagatgagaatgttgcattggatgtgtggtaagactagacatggtaggatta 28186977  T
Q  499 gaaatgacaatattaaagaga 519  Q
    |||||||||| |||| |||||    
T  28186976 gaaatgacaacattagagaga 28186956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 561
Target Start/End: Original strand, 33667185 - 33667252
Alignment:
Q  492 agaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    ||||||||||||||||| ||||| |||||  |||| | ||||| |||| ||||||||||| |||||||||    
T  33667185 agaattagaaatgacaacattaacgagag--ttggggtagcacctatagtagaaaagatggtagaaacta 33667252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 521
Target Start/End: Complemental strand, 2075833 - 2075760
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    ||||||||||||||||||| ||| ||  ||||| ||||| | |||| ||||| |||||||| |||| |||||||    
T  2075833 agatgaggatgttgcgttggatgagttgtaagactagacaagataggattaggaatgacaacattagagagaga 2075760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 513
Target Start/End: Complemental strand, 21362828 - 21362763
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatta 513  Q
    |||||| ||| ||| |||| |||||||||||||||||| || || |||||| |||| |||||||||    
T  21362828 agatgaagatcttgtgttggatgtgtgataagattagatgaaattgaattaaaaattacaatatta 21362763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 27998341 - 27998394
Alignment:
Q  443 atcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaat 496  Q
    |||| ||||||||||||||||||| ||||||| ||||| ||||| | |||||||    
T  27998341 atcagagatgaggatgttgcgttggatgtgtggtaagactagacaaaatagaat 27998394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 400 - 561
Target Start/End: Original strand, 40419514 - 40419675
Alignment:
Q  400 agtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattag 499  Q
    ||||||||  ||||||||||||||||  | ||||| |||| | | || ||||||||||| |||||||||||| || ||| | |||| || ||||||||||    
T  40419514 agtgttgggtggtaaagaaccaacacgaacataaagtaagtgtagcagagatgaggatggtgcgttgaatgtatggtaaaactagatgagatagaattag 40419613  T
Q  500 aaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    ||||||||| |||| ||||||| |||| | || || |||| ||||| ||||| ||| |||||    
T  40419614 aaatgacaacattagagagagagttggggtagaacttatagtagaatagatggtagtaacta 40419675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 450 - 521
Target Start/End: Complemental strand, 40920894 - 40920823
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    |||| |||||||| ||| ||||||| ||||||||||||| |||| ||||||||| ||||||||| |||||||    
T  40920894 atgaagatgttgcattggatgtgtggtaagattagacgagataggattagaaattacaatattagagagaga 40920823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 561
Target Start/End: Complemental strand, 18793400 - 18793234
Alignment:
Q  395 gatatagtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatataga 494  Q
    ||||||||||||| |||||||||||||  ||| | ||||| |||| | | || | |||| |||||||||||| |||||||  |||| |||||   |||||    
T  18793400 gatatagtgttgggcggtaaagaaccagaacaaacataaagtaagcgtaacataaatgatgatgttgcgttggatgtgtggaaagactagacaggataga 18793301  T
Q  495 attagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    | || ||||||| | |||||||||||  |||| | || || |||  ||||||||||| |||||||||    
T  18793300 actaaaaatgacgacattaaagagagggttggggtaggacttattgtagaaaagatggtagaaacta 18793234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 400 - 561
Target Start/End: Original strand, 26016312 - 26016473
Alignment:
Q  400 agtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattag 499  Q
    |||||||| ||||||||||||||||   | ||||| |||| | | || ||||||||||||||||||| ||||||| ||||| |||||   ||| |||||     
T  26016312 agtgttgggcggtaaagaaccaacaagaacataaagtaagcgtagcagagatgaggatgttgcgttggatgtgtggtaagactagacaggatataattat 26016411  T
Q  500 aaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    |||| |    |||| ||||||| |||| | | ||| ||||| |||||||||| |||||||||    
T  26016412 aaataatggcattagagagagagttggggtaacacctatatgagaaaagatggtagaaacta 26016473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 4590885 - 4590813
Alignment:
Q  446 aaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagag 518  Q
    ||||| ||||||||||||||||||||| | | ||| ||||| | |||| ||||||||||||||||||| ||||    
T  4590885 aaagacgaggatgttgcgttgaatgtgcggtgagactagacaagataggattagaaatgacaatattagagag 4590813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 551
Target Start/End: Original strand, 9509241 - 9509344
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    |||||||||||||| |||| ||| ||||||||| |||||   |||  |||||||||||||  |||| ||||||| |||| | ||||| |||| |||||||    
T  9509241 agatgaggatgttgtgttggatgagtgataagactagacaggatatgattagaaatgacaccattagagagagagttggggtagcacctatagtagaaaa 9509340  T
Q  548 gatg 551  Q
    ||||    
T  9509341 gatg 9509344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 493
Target Start/End: Original strand, 7814387 - 7814432
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatag 493  Q
    ||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  7814387 agatgaggatgttacgttgaatgtgtgataagactagacgaaatag 7814432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 561
Target Start/End: Original strand, 16943098 - 16943211
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||| || ||| |||| ||| ||||||||| ||||||| ||| ||||||| || |||||||||  |||||| |||| | || || |||| |||||||    
T  16943098 agatgagaatattgtgttggatgcgtgataagactagacgagataaaattagacattacaatattagggagagagttggggtagtacctatagtagaaaa 16943197  T
Q  548 gatgatagaaacta 561  Q
    |||| | |||||||    
T  16943198 gatggtggaaacta 16943211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 410 - 526
Target Start/End: Complemental strand, 52442901 - 52442785
Alignment:
Q  410 ggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaat 509  Q
    ||||| ||| ||||||| |||||||||||| | | || | |||||||||||| |||| ||||||| ||||| ||||| | |||  ||||||||||| ||     
T  52442901 ggtaatgaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagacaagataagattagaaatgagaac 52442802  T
Q  510 attaaagagagaattgg 526  Q
    |||  ||||||| ||||    
T  52442801 attggagagagagttgg 52442785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 558
Target Start/End: Complemental strand, 9599786 - 9599643
Alignment:
Q  415 agaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaa 514  Q
    ||||||||||||  ||| || |||| | | || |||||||||||||| |||| ||| ||| ||||| ||||||  |||  ||||| |||||||  ||||     
T  9599786 agaaccaacacaataatcaagtaagcgtagcagagatgaggatgttgtgttggatgagtggtaagactagacgggatatgattaggaatgacatcattag 9599687  T
Q  515 agagagaattggtggagcacgtatattagaaaagatgatagaaa 558  Q
    ||||||| |||| | | ||| |||| ||||||||||| ||||||    
T  9599686 agagagagttggagtaacacctatagtagaaaagatggtagaaa 9599643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 39422398 - 39422288
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaaga 549  Q
    ||||| |||||| |||  ||||||| || ||||| | || |||||||||||||||||||||||| | ||||| |||| | | ||| |||| |||||||||    
T  39422398 atgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaaga 39422300  T
Q  550 tgatagaaacta 561  Q
    |  |||||||||    
T  39422299 tagtagaaacta 39422288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 1210668 - 1210778
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| |||||   |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  1210668 agatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaa 1210767  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  1210768 gttggtagaaa 1210778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 551
Target Start/End: Original strand, 1661349 - 1661456
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattaga----aatgacaatattaaagagagaattggtggagcacgtatattag 543  Q
    |||||| ||||||| ||||||||| |||||||| |||| |  |||| ||||||    ||||||||||||  ||||||| |||| | ||||| |||| |||    
T  1661349 agatgaagatgttgtgttgaatgtctgataagactagatgtgataggattagaaatgaatgacaatatttgagagagagttggggtagcacctatagtag 1661448  T
Q  544 aaaagatg 551  Q
    ||||||||    
T  1661449 aaaagatg 1661456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 521
Target Start/End: Original strand, 4379891 - 4380001
Alignment:
Q  411 gtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaata 510  Q
    |||||||||||||||  |||||||| |||   | |  |||||||||||||| |||| ||||||| ||||| ||||  | |||  |||||||||||||| |    
T  4379891 gtaaagaaccaacacgaaaataaataaagcttagctgagatgaggatgttgtgttggatgtgtggtaagactagaaaagatatgattagaaatgacaaca 4379990  T
Q  511 ttaaagagaga 521  Q
    ||| |||||||    
T  4379991 ttagagagaga 4380001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 506
Target Start/End: Complemental strand, 34827461 - 34827403
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgac 506  Q
    |||||||||||||| |||| ||| ||| ||||| |||||||||||  ||||||||||||    
T  34827461 agatgaggatgttgtgttggatgagtggtaagactagacgatataagattagaaatgac 34827403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 521
Target Start/End: Original strand, 17815402 - 17815470
Alignment:
Q  452 gaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    |||||||||| |||| ||||||| || || ||||||  |||| ||||||||||||||||||| |||||||    
T  17815402 gaggatgttgtgttggatgtgtggta-gactagacgggatagcattagaaatgacaatattagagagaga 17815470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 33083983 - 33084094
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaaga 549  Q
    ||||||||| ||||||| ||||||| ||||| |||| |  ||||||||||||||||| |||||| ||||||| |||| | ||||| |||  |||||||||    
T  33083983 atgaggatgctgcgttggatgtgtggtaagactagatgggatagaattagaaatgacgatattagagagagagttggggtagcacctatggtagaaaaga 33084082  T
Q  550 tgatagaaacta 561  Q
    || |||||||||    
T  33084083 tggtagaaacta 33084094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 448 - 521
Target Start/End: Complemental strand, 5129196 - 5129123
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    ||||||||||||||||||||||||||| ||||||| || |  || | ||||||||||||||||||| |||||||    
T  5129196 agatgaggatgttgcgttgaatgtgtggtaagattcgatgtgatcggattagaaatgacaatattagagagaga 5129123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 448 - 525
Target Start/End: Complemental strand, 12134260 - 12134183
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattg 525  Q
    ||||||| |||||| |||| |||||||  ||||  ||| ||||||||||||||||||||||||||| |||||||||||    
T  12134260 agatgagaatgttgtgttggatgtgtggcaagacaagatgatatagaattagaaatgacaatattagagagagaattg 12134183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 508
Target Start/End: Complemental strand, 10617584 - 10617525
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaa 508  Q
    |||||||||| |||||||| ||||||| ||||| ||||||| |||||||||||||||||||    
T  10617584 agatgaggat-ttgcgttggatgtgtgttaagactagacgaaatagaattagaaatgacaa 10617525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 395 - 561
Target Start/End: Complemental strand, 6641824 - 6641655
Alignment:
Q  395 gatatagtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgagga---tgttgcgttgaatgtgtgataagattagacgatat 491  Q
    |||| |||||||| |||||||||| |||||   |||||||||||| | | ||||||||||||   |||||||||  |||| |  ||||| |||| |  ||    
T  6641824 gataaagtgttgggcggtaaagaaacaacatgaaaataaattaagcgtaacaaagatgaggaggatgttgcgttcgatgttttgtaagactagatgggat 6641725  T
Q  492 agaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    |  ||| ||||||||||||||| ||| ||| |||| | | ||| |||| ||||||||||| |||||||||    
T  6641724 aagattggaaatgacaatattagagatagagttggggtatcacctatagtagaaaagatggtagaaacta 6641655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 557
Target Start/End: Complemental strand, 7513793 - 7513641
Alignment:
Q  400 agtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattag 499  Q
    |||||||| ||||||| ||||| |||  | |||| ||||||| | || |||| | |||||||| |||| |||||| ||||| ||||||  ||| ||||||    
T  7513793 agtgttgggcggtaaaaaaccagcacgaacataagttaagagtagcagagataaagatgttgccttgagtgtgtggtaagactagacgcgatataattag 7513694  T
Q  500 aaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaa 557  Q
    |||||||| |     ||||||| || | ||||||| |||| ||||||||||| |||||    
T  7513693 aaatgacatt-----agagagagttcggggagcacctataatagaaaagatggtagaa 7513641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 526
Target Start/End: Complemental strand, 33998381 - 33998285
Alignment:
Q  430 ataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattgg 526  Q
    |||||||||| | | || |||||| |||||||||||| ||||||| ||||| |||| |  |||| |||||||||||| | |||| ||||||| ||||    
T  33998381 ataaattaagcgtagcagagatgaagatgttgcgttggatgtgtggtaagactagatgtgataggattagaaatgactacattagagagagagttgg 33998285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 519
Target Start/End: Original strand, 7080003 - 7080129
Alignment:
Q  393 gtgatatagtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatata 492  Q
    |||||| |||||||| ||||||| |||||||| | ||||||||||||   | ||| ||| ||||||  | |||| ||| ||| ||| |||| | || |||    
T  7080003 gtgatagagtgttgggcggtaaataaccaacaaaaaaataaattaagcatagcaaggataaggatgccgtgttggatgggtggtaaaattataagagata 7080102  T
Q  493 gaattagaaatgacaatattaaagaga 519  Q
    || ||| ||||||||| ||||||||||    
T  7080103 gagttataaatgacaacattaaagaga 7080129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 521
Target Start/End: Complemental strand, 9594071 - 9593998
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    ||||||||||||||||||| ||| ||| ||||| ||||||  |||| ||||| |||||||  |||| |||||||    
T  9594071 agatgaggatgttgcgttggatgagtggtaagactagacgggataggattaggaatgacaccattagagagaga 9593998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 557
Target Start/End: Complemental strand, 44047703 - 44047598
Alignment:
Q  452 gaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatg 551  Q
    ||||||||||| ||||||| ||| || |||||| ||  ||||||||||||||||||| |||| ||||||| |||| | ||||| |||| |||||||| ||    
T  44047703 gaggatgttgcattgaatgcgtggtaggattaggcgggatagaattagaaatgacaacattagagagagagttggggtagcacctatagtagaaaaggtg 44047604  T
Q  552 atagaa 557  Q
     |||||    
T  44047603 gtagaa 44047598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 561
Target Start/End: Original strand, 54470098 - 54470243
Alignment:
Q  416 gaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaa 515  Q
    |||||||||| ||||||||||||| | |  | ||||||||||||||| ||| ||||||| ||||| |||| |  |||  ||| ||||| |||| |||| |    
T  54470098 gaaccaacacgtaaataaattaagcgtaatagagatgaggatgttgcattggatgtgtggtaagactagatgggatatgatttgaaataacaacattaga 54470197  T
Q  516 gagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    |||||| |||| | ||||| |||| ||||||||||| | |||||||    
T  54470198 gagagagttggggtagcacctatagtagaaaagatggtggaaacta 54470243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 445 - 560
Target Start/End: Original strand, 45423539 - 45423650
Alignment:
Q  445 caaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattaga 544  Q
    ||||||||||||||||| ||||  |||||| ||||| ||||||  ||||||||||||||||||| |||| ||||    |||  | ||||| |||| ||||    
T  45423539 caaagatgaggatgttgtgttggttgtgtggtaagactagacgggatagaattagaaatgacaacattatagag----ttgaggtagcacctataataga 45423634  T
Q  545 aaagatgatagaaact 560  Q
    ||||||| ||||||||    
T  45423635 aaagatggtagaaact 45423650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 428 - 513
Target Start/End: Complemental strand, 31403399 - 31403314
Alignment:
Q  428 aaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatta 513  Q
    |||||||||||| | | || |||||| ||||||| |||||||||||| | ||||||||||  |||| |||||||||||||| ||||    
T  31403399 aaataaattaagcgtagcagagatgatgatgttgagttgaatgtgtggtgagattagacgggataggattagaaatgacaacatta 31403314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 445 - 508
Target Start/End: Complemental strand, 290155 - 290092
Alignment:
Q  445 caaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaa 508  Q
    |||| |||||||||||| ||| ||||||||||| |||||||||| ||| ||||| |||||||||    
T  290155 caaaaatgaggatgttgtgtttaatgtgtgatacgattagacgagataaaattaaaaatgacaa 290092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 17900405 - 17900516
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaaga 549  Q
    ||||||||||||||||| ||||||| ||||| |||| |  ||| ||||||||||||| | |||| |||  || |||| | ||||| |||| |||||||||    
T  17900405 atgaggatgttgcgttggatgtgtggtaagactagatgggataaaattagaaatgacgacattagagacggagttggggtagcacctatagtagaaaaga 17900504  T
Q  550 tgatagaaacta 561  Q
     | |||||||||    
T  17900505 cggtagaaacta 17900516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 515
Target Start/End: Original strand, 18966476 - 18966543
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaa 515  Q
    |||||| |||||||||||| ||||||| ||||||||||| | |||| |||| ||||||||| ||||||    
T  18966476 agatgaagatgttgcgttggatgtgtggtaagattagacaaaataggattataaatgacaacattaaa 18966543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 547
Target Start/End: Original strand, 35690227 - 35690326
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||  ||||| ||||||| |||| ||||| |||||||   ||||||||||| |||| | ||||| |||| |||||||    
T  35690227 agatgaggatgttgcgttggatgagtagtaagactagacgagataggattaggaatgacacctttaaagagagagttggggtagcacctatagtagaaaa 35690326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 561
Target Start/End: Complemental strand, 10775829 - 10775668
Alignment:
Q  400 agtgttggacggtaaagaaccaacacataaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattag 499  Q
    |||||||| ||||||||||| ||  || |||||||||||| | | || |||||| ||||||| |||| ||| |||  | ||  ||||   | ||||||||    
T  10775829 agtgttgggcggtaaagaactaatgcaaaaataaattaagcgtagcagagatgatgatgttgtgttggatgcgtggcaggaccagacaggaaagaattag 10775730  T
Q  500 aaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    ||||||||| |||| ||||||  |||| | | ||| |||| ||||||||||| |||||||||    
T  10775729 aaatgacaacattagagagagtgttggggtaacacctatagtagaaaagatggtagaaacta 10775668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 513
Target Start/End: Complemental strand, 40933255 - 40933190
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatta 513  Q
    ||||||||||||||||||||||||||| |||||  | ||   |||||||||||||||| |||||||    
T  40933255 agatgaggatgttgcgttgaatgtgtggtaagacaatacatgatagaattagaaatgaaaatatta 40933190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 2588905 - 2588969
Alignment:
Q  449 gatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatta 513  Q
    |||||||||||||||||| ||||||| ||||| |||| |  |||| |||||||||||||| ||||    
T  2588905 gatgaggatgttgcgttggatgtgtggtaagactagaagggataggattagaaatgacaacatta 2588969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 21106908 - 21106972
Alignment:
Q  449 gatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatta 513  Q
    ||||||||||||| |||  ||||||| ||||| ||||||  ||||||||||||||||||| ||||    
T  21106908 gatgaggatgttgggttcgatgtgtggtaagactagacgtgatagaattagaaatgacaacatta 21106972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 456 - 561
Target Start/End: Original strand, 44360014 - 44360123
Alignment:
Q  456 atgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatta----aagagagaattggtggagcacgtatattagaaaagatg 551  Q
    |||||| |||| ||||||| || || ||| ||| ||||||||||||||||||||||||     ||||||| |||| | | ||| |||| |||||||||||    
T  44360014 atgttgtgttggatgtgtggtaggactaggcgagatagaattagaaatgacaatattagatggagagagagttggggtatcacctatagtagaaaagatg 44360113  T
Q  552 atagaaacta 561  Q
     |||||||||    
T  44360114 gtagaaacta 44360123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 561
Target Start/End: Complemental strand, 36557346 - 36557275
Alignment:
Q  490 atagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    ||||||||||||||||| |||||  ||||||| |||| | |||||  ||| ||||||||||| |||||||||    
T  36557346 atagaattagaaatgacgatattggagagagagttggggcagcacccatagtagaaaagatggtagaaacta 36557275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 526
Target Start/End: Complemental strand, 51841543 - 51841472
Alignment:
Q  455 gatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattgg 526  Q
    ||||||| |||| ||||||| ||||| ||||| | |||||||  |||| |||||||||| ||||||||||||    
T  51841543 gatgttgtgttggatgtgtggtaagactagacaagatagaatatgaaacgacaatattagagagagaattgg 51841472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 12494673 - 12494783
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| |||||   |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  12494673 agatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaa 12494772  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  12494773 gttggtagaaa 12494783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Complemental strand, 31960173 - 31960063
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| |||||   |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  31960173 agatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaa 31960074  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  31960073 gttggtagaaa 31960063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 56375213 - 56375323
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| ||||| | |||  ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  56375213 agatgaggatgttgcgttggatgagtggtaagactagacaagataagattaggaatgacaccattagagagagagtaggggtagcacctataatagaaaa 56375312  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  56375313 gttggtagaaa 56375323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 513
Target Start/End: Complemental strand, 20105830 - 20105765
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatta 513  Q
    |||||| ||||||||| || ||||||| ||||| ||||||| |||  |||||||||||||| ||||    
T  20105830 agatgatgatgttgcgatggatgtgtggtaagactagacgagatatgattagaaatgacaacatta 20105765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 445 - 561
Target Start/End: Complemental strand, 36820321 - 36820207
Alignment:
Q  445 caaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattaga 544  Q
    ||||||| ||| |||||||||| ||||||| ||||| ||||||| |||| |||||||||||| | |||  ||||||| |||| | ||||| ||||||||     
T  36820321 caaagataaggttgttgcgttggatgtgtggtaagactagacgagataggattagaaatgacgacatt--agagagagttggggtagcacctatattagc 36820224  T
Q  545 aaagatgatagaaacta 561  Q
    ||||||| | |||||||    
T  36820223 aaagatggtggaaacta 36820207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 448 - 521
Target Start/End: Original strand, 46568039 - 46568112
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    |||||||||||||| |||| ||||||| ||||| ||||| | || |||||||||||||||| |||| |||||||    
T  46568039 agatgaggatgttgtgttggatgtgtgttaagactagaccagattgaattagaaatgacaacattagagagaga 46568112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 38054698 - 38054624
Alignment:
Q  446 aaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagag 520  Q
    ||||||||| ||||||||||||||| ||| ||||| ||||||  |||| ||||||||||| || |||| ||||||    
T  38054698 aaagatgagaatgttgcgttgaatgggtggtaagactagacgggataggattagaaatgataacattagagagag 38054624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 54278943 - 54279053
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||  ||| ||||| ||||| | |||||||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  54278943 agatgaggatgttgcgttggataagtggtaagactagacaagatagaattaggaatgacaccattagagagagagtaggggtagcacctatagtagaaaa 54279042  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  54279043 gttggtagaaa 54279053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 558
Target Start/End: Complemental strand, 345065 - 344960
Alignment:
Q  453 aggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatga 552  Q
    ||||||||  |||| || |||| ||||| ||||||| |||| |||||||||||  | |||| ||||||| |||| | ||||| |||| |||||||||||     
T  345065 aggatgttatgttggatttgtggtaagactagacgagataggattagaaatgatgacattagagagagagttggggtagcacttatagtagaaaagatgt 344966  T
Q  553 tagaaa 558  Q
    ||||||    
T  344965 tagaaa 344960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 452 - 512
Target Start/End: Original strand, 3365008 - 3365068
Alignment:
Q  452 gaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatt 512  Q
    |||||||||| || | ||||||| | || |||||||| |||||||||||||||||||||||    
T  3365008 gaggatgttgtgtcggatgtgtggttaggttagacgacatagaattagaaatgacaatatt 3365068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 561
Target Start/End: Original strand, 3987012 - 3987083
Alignment:
Q  490 atagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    ||||||||||||||||| |||||  ||||||| |||| | | ||| |||| ||||||||||| |||||||||    
T  3987012 atagaattagaaatgacgatattggagagagagttggggtatcacctatagtagaaaagatggtagaaacta 3987083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 518
Target Start/End: Complemental strand, 2341073 - 2341003
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagag 518  Q
    ||||||||||||||| ||| ||||||| ||||| |||||   |||||||||||||||| || |||| ||||    
T  2341073 agatgaggatgttgcattggatgtgtggtaagactagacatgatagaattagaaatgaaaacattagagag 2341003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 508
Target Start/End: Original strand, 11663574 - 11663632
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaa 508  Q
    |||||||||| |||||| ||||||| ||||||| || || ||||||||||| |||||||    
T  11663574 atgaggatgtcgcgttggatgtgtggtaagattcgatgagatagaattagatatgacaa 11663632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 561
Target Start/End: Original strand, 50249304 - 50249420
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaat---tagaaatgacaatattaaagagagaattggtggagcacgtatattaga 544  Q
    |||||| |||||| ||||| ||||||| || || ||||||| |||| ||   ||||||||| || |||| ||||||| |||| | ||| |||||| ||||    
T  50249304 agatgatgatgtttcgttggatgtgtggtaggactagacgagataggatgattagaaatgataacattagagagagagttggggtagcgcgtatagtaga 50249403  T
Q  545 aaagatgatagaaacta 561  Q
    ||||||| | |||||||    
T  50249404 aaagatggtggaaacta 50249420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 52138723 - 52138833
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| |||||   |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  52138723 agatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaa 52138822  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  52138823 gttggtagaaa 52138833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 558
Target Start/End: Original strand, 28245357 - 28245470
Alignment:
Q  445 caaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattaga 544  Q
    |||||||||||||||||||||| ||| ||| ||||| ||| |   |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| ||||    
T  28245357 caaagatgaggatgttgcgttggatgagtggtaagactagcctggataggattaggaatgacatcattagagagagagtgggggtagcacctatagtaga 28245456  T
Q  545 aaagatgatagaaa 558  Q
    |||| || ||||||    
T  28245457 aaagttggtagaaa 28245470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 513
Target Start/End: Original strand, 49841514 - 49841599
Alignment:
Q  428 aaataaattaagagcatcaaagatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatta 513  Q
    |||||||||||| | | || |||||||||||||| |||| ||||||  ||||| |||||||  ||  |||||||||||||| ||||    
T  49841514 aaataaattaagtgtagcatagatgaggatgttgtgttggatgtgtagtaagactagacgaggtaagattagaaatgacaacatta 49841599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 448 - 561
Target Start/End: Original strand, 38434874 - 38434987
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||| ||| ||| ||| ||| | ||||||| | |  |||||||||||||| |||| |||||||||||| | ||||| |||| |||||||    
T  38434874 agatgaggatgttgcattggatgcgtggtaaaactagacgagagaagattagaaatgacaacattagagagagaattggggtagcacctatagtagaaaa 38434973  T
Q  548 gatgatagaaacta 561  Q
    |||| | |||||||    
T  38434974 gatggtggaaacta 38434987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 504
Target Start/End: Original strand, 45077671 - 45077727
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatg 504  Q
    ||||||||||||||||||| ||||||| ||||| ||||| | |||||||||||||||    
T  45077671 agatgaggatgttgcgttggatgtgtggtaagactagactagatagaattagaaatg 45077727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 490 - 561
Target Start/End: Complemental strand, 13241062 - 13240991
Alignment:
Q  490 atagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaagatgatagaaacta 561  Q
    |||| |||||||||||||| |||| |||||||||||| | |||| |||| |||||||||||| | |||||||    
T  13241062 ataggattagaaatgacaacattagagagagaattggagtagcaagtatgttagaaaagatggtggaaacta 13240991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 9556724 - 9556656
Alignment:
Q  451 tgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagaga 519  Q
    ||||||||||| |||| ||||||| ||||||||||||  |||  |||||||||||||| |||| |||||    
T  9556724 tgaggatgttgtgttggatgtgtggtaagattagacgggatatgattagaaatgacaacattagagaga 9556656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 4598921 - 4598808
Alignment:
Q  450 atgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatatt--aaagagagaattggtggagcacgtatattagaaaa 547  Q
    |||| |||||||||||| ||||||| ||||| ||||||  ||||||||  ||||||| | |||  | ||||||| |||| | ||||| |||| ||| |||    
T  4598921 atgatgatgttgcgttggatgtgtggtaagactagacgggatagaattcaaaatgacgacattagagagagagagttggggtagcacctatagtagtaaa 4598822  T
Q  548 gatgatagaaacta 561  Q
    |||| |||||||||    
T  4598821 gatggtagaaacta 4598808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 36183374 - 36183484
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| |||||   |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  36183374 agatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacacaattagagagagagtaggggtagcacctatagtagaaaa 36183473  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  36183474 gttggtagaaa 36183484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 38429807 - 38429917
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    ||||||||||||||||||| ||| ||| ||||| |||||   |||| ||||| |||||||  |||| ||||||| | || | ||||| |||| |||||||    
T  38429807 agatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggcagcacctatagtagaaaa 38429906  T
Q  548 gatgatagaaa 558  Q
    | || ||||||    
T  38429907 gttggtagaaa 38429917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 561
Target Start/End: Original strand, 42092442 - 42092553
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagagaattggtggagcacgtatattagaaaa 547  Q
    |||||| |||||||| ||| ||||||  ||||| ||||||  |||  ||||||||||||||| ||  ||||||| |||| | ||| | |||| |||||||    
T  42092442 agatgatgatgttgcattggatgtgtagtaagactagacgggatatgattagaaatgacaatgtt--agagagagttggggtagcgcctatactagaaaa 42092539  T
Q  548 gatgatagaaacta 561  Q
    |||| |||||||||    
T  42092540 gatggtagaaacta 42092553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 521
Target Start/End: Original strand, 7825281 - 7825354
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaatattaaagagaga 521  Q
    |||| |||||||||||||| ||||||| ||||| |||||   |||  ||||||||||||| ||||| |||||||    
T  7825281 agattaggatgttgcgttggatgtgtggtaagactagactggatatgattagaaatgacactattagagagaga 7825354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 44230 - 44169
Alignment:
Q  448 agatgaggatgttgcgttgaatgtgtgataagattagacgatatagaattagaaatgacaat 509  Q
    ||||||||||||||||||| ||||| | ||||| |||| | ||||| |||| ||||||||||    
T  44230 agatgaggatgttgcgttggatgtgcggtaagactagatggtatagtattaaaaatgacaat 44169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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