View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0783-Insertion-4 (Length: 695)
Name: NF0783-Insertion-4
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 656; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 8 - 691
Target Start/End: Complemental strand, 11459945 - 11459262
Alignment:
| Q |
8 |
tggccgacgtggttgggtgattcaacattgttcttccacaaaatcgccgaagacggttggtggagcatctttcggatcgacttactggacaccaatctaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
11459945 |
tggccgacgtggttgggtgattcaacattgttcttccacaaaatcgccgaagacggttggtggagcatctttcggattgacttaccggacaccaatctaa |
11459846 |
T |
|
| Q |
108 |
atggatttccagttccatcggttcgcgttacgccgcctggtttacattgtttcactcccgtcgcaatgcacgatggtaatcacatcgctgtcgcaactcg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11459845 |
atggatttccagttccatcggttcgcgttacgccgcctggtttacattgtttcactcccgtcgcaatgcacgatggtaatcacatcgctctcgcaactcg |
11459746 |
T |
|
| Q |
208 |
ccggagagaaagtgatttccgtcacatcgagattttcaatctcgagacacaaacattccaaaaattaacagaaacaataaaccctaattttcaccactat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11459745 |
ccggagagaaagtgatttccgtcacatcgagattttcaatctcgagacacaaacattccaaaaaataacagaaacaataaaccctaattttcaccactat |
11459646 |
T |
|
| Q |
308 |
aatccatttgtctcccgtgattcttgttacctcggttaccaccgattcagaggcgagtcaagtcaaggtgagtcaacatacccacatctcgaccctgtga |
407 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11459645 |
aatccatttatctcccgtgattcttgttacctcggttaccaccgattcagaggcgagtcaagtcaaggtgagtcaacatacccacatctcgaccctgtga |
11459546 |
T |
|
| Q |
408 |
agtctctggatcctaacatacagttacttagactaaacggttcatttcctagcttctcaccgaatggtgatttcatcgcgttcaaccacggttttgatgt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
11459545 |
agtctctggatcctaacatacagttacttagactaaacggttcatttcctagcttctcaccgaatggtgatttcatcgcgtttaaccacggttttgatgt |
11459446 |
T |
|
| Q |
508 |
tagaaacaatagtggtgtcaagataatcaaatccaacggttctaaacgctggaacttaataaagggaagaatgtgttttggtcacgcgtggagcgcagct |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
11459445 |
tagaaacaatagtggtgtcaagataatcaaatccaacggttctaaacgctggaacttaataaagggaagaatgtgttttggtcacgcgtggagcgcaact |
11459346 |
T |
|
| Q |
608 |
gagaagaacattatatacacaactataggtccaattttccaattggtttctaaaacggttcaaattgcacgtatcgagtttgac |
691 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11459345 |
gagaagaacattatatacacaactataggtccaattttccaattggtttctaaaacggttcaaattgcacgtatcgagtttgac |
11459262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 8 - 489
Target Start/End: Complemental strand, 11321342 - 11320861
Alignment:
| Q |
8 |
tggccgacgtggttgggtgattcaacattgttcttccacaaaatcgccgaagacggttggtggagcatctttcggatcgacttactggacaccaatctaa |
107 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||| || || ||| ||| ||| | ||||| | |
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|
| T |
11321342 |
tggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgatgacggttggtggagcattttccgagccgatttaaaggattctaatctta |
11321243 |
T |
|
| Q |
108 |
atggatttccagttccatcggttcgcgttacgccgcctggtttacattgtttcactcccgtcgcaatgcacgatggtaatcacatcgctgtcgcaactcg |
207 |
Q |
| |
|
||| ||| | || | |||| | || || || || ||||| ||||||||||||| |||||| || || | || | |||||| ||||||||||| |
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|
| T |
11321242 |
ccggaattcaatcctcacctattcgtatcactccaccgggattacactgtttcactcccgccgcaattcaaaatagcaaccgcatcgccgtcgcaactcg |
11321143 |
T |
|
| Q |
208 |
ccggagagaaagtgatttccgtcacatcgagattttcaatctcgagacacaaacattccaaaaattaacagaaacaataaaccctaattttcaccactat |
307 |
Q |
| |
|
|||| ||||||||||| ||| || ||||| || ||| ||||||| || |||| || || ||| ||||| | || |||| ||| ||||||| |||||| |
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|
| T |
11321142 |
tcggaaagaaagtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactat |
11321043 |
T |
|
| Q |
308 |
aatccatttgtctcccgtgattcttgttacctcggttaccaccgattcagaggcgagtcaagtcaaggtgagtcaacatacccacatctcgaccctgtga |
407 |
Q |
| |
|
||||||||||| || | ||||||||||||| | ||||||||||| ||||||||||||||| ||| ||||||||||| || ||||||||||||| |||| |
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|
| T |
11321042 |
aatccatttgtttcacctgattcttgttacattggttaccaccggttcagaggcgagtcagttcagggtgagtcaacctatccacatctcgaccaggtga |
11320943 |
T |
|
| Q |
408 |
agtctctggatcctaacatacagttacttagactaaacggttcatttcctagcttctcaccgaatggtgatttcatcgcgtt |
489 |
Q |
| |
|
| |||| || | | |||||| || || ||| | |||||||| ||||| || ||||||||| | ||||||||||||||||| |
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|
| T |
11320942 |
aatctccggttgatgacatacgcttgctaagattgaacggttcgtttccgagtttctcaccggacggtgatttcatcgcgtt |
11320861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 8 - 489
Target Start/End: Complemental strand, 11479363 - 11478882
Alignment:
| Q |
8 |
tggccgacgtggttgggtgattcaacattgttcttccacaaaatcgccgaagacggttggtggagcatctttcggatcgacttactggacaccaatctaa |
107 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||| || || ||| ||| ||| | ||||| | |
|
|
| T |
11479363 |
tggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgatgacggttggtggagcattttccgagccgatttaaaggattctaatctta |
11479264 |
T |
|
| Q |
108 |
atggatttccagttccatcggttcgcgttacgccgcctggtttacattgtttcactcccgtcgcaatgcacgatggtaatcacatcgctgtcgcaactcg |
207 |
Q |
| |
|
||| ||| | || | |||| | || || || || ||||| ||||||||||||| |||||| || || | || | |||||| ||||||||||| |
|
|
| T |
11479263 |
ccggaattcaatcctcacctattcgtatcactccaccgggattacactgtttcactcccgccgcaattcaaaatagcaaccgcatcgccgtcgcaactcg |
11479164 |
T |
|
| Q |
208 |
ccggagagaaagtgatttccgtcacatcgagattttcaatctcgagacacaaacattccaaaaattaacagaaacaataaaccctaattttcaccactat |
307 |
Q |
| |
|
|||| ||||||||||| ||| || ||||| || ||| ||||||| || |||| || || ||| ||||| | || |||| ||| ||||||| |||||| |
|
|
| T |
11479163 |
tcggaaagaaagtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactat |
11479064 |
T |
|
| Q |
308 |
aatccatttgtctcccgtgattcttgttacctcggttaccaccgattcagaggcgagtcaagtcaaggtgagtcaacatacccacatctcgaccctgtga |
407 |
Q |
| |
|
||||||||||| || | ||||||||||||| | ||||||||||| ||||||||||||||| ||| ||||||||||| || ||||||||||||| |||| |
|
|
| T |
11479063 |
aatccatttgtttcacctgattcttgttacattggttaccaccggttcagaggcgagtcagttcagggtgagtcaacctatccacatctcgaccaggtga |
11478964 |
T |
|
| Q |
408 |
agtctctggatcctaacatacagttacttagactaaacggttcatttcctagcttctcaccgaatggtgatttcatcgcgtt |
489 |
Q |
| |
|
| |||| || | | |||||| || || ||| | |||||||| ||||| || ||||||||| | ||||||||||||||||| |
|
|
| T |
11478963 |
aatctccggttgatgacatacgcttgctaagattgaacggttcgtttccgagtttctcaccggacggtgatttcatcgcgtt |
11478882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 30441868 - 30441801
Alignment:
| Q |
8 |
tggccgacgtggttgggtgattcaacattgttcttccacaaaatcgccgaagacggttggtggagcat |
75 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||| |||| ||||||||| || |||||||||||||| |
|
|
| T |
30441868 |
tggccgacgtggttaggcaattcaacggtgttctttcacagaatcgccgatgatggttggtggagcat |
30441801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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