View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0783-Insertion-5 (Length: 671)
Name: NF0783-Insertion-5
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 671
Target Start/End: Complemental strand, 27681420 - 27680763
Alignment:
| Q |
8 |
aggtatatgatttgctacaatctactttggattcaagaactaggactacatcatacataa-tcattaagcttgattccaaaatagtagtagatcactttc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27681420 |
aggtatatgatttgctacaatctactttggattcaagaactaggactacatcatacataaatcattaagcttgattccaaaatagtagtagatcactttc |
27681321 |
T |
|
| Q |
107 |
attcacagaattgggtctattgttaacgattgtatccggcctaagaatttattttgtccaaattggatggtagagtacactaggagaaaaactaatgtag |
206 |
Q |
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| T |
27681320 |
attcacacgctgtagactatttagaa---ttgac----gcctaagaatttattttgttcaaattggatggtagagtacaccaggagaaaaactaatgtag |
27681228 |
T |
|
| Q |
207 |
tcactcgtaaactaacatacacatctaatcctctagttttgagttcattccaatttgcactcaagacnnnnnnnnataggcaaatgaaatatgacaatgg |
306 |
Q |
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|||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
27681227 |
tcacccataaactaacatatacatctaatcctctagttttgagttcattccaatttgtactcaagacttttttttataggtaaatgaaatatgacaatgg |
27681128 |
T |
|
| Q |
307 |
ccattaaaaatcacagacctaagtggagaagtcaggtttaaactttaatcacgacgttcaacttagcaattttgatatttttataagttgagttagaaca |
406 |
Q |
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| ||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27681127 |
ctattaaaaatcacacacataagtggagaagtcaggtttaaacttcaatcacgacgttcaacttagcaattttgatatttttataagttgagatagaact |
27681028 |
T |
|
| Q |
407 |
tataaacttattaataatgtatgcagctgaggcattctaacagatccgtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcac |
506 |
Q |
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| T |
27681027 |
tataaacttattagtaatgtatgcagctgaggcatcctaacagatccgtagacttgaactttgctcctacatgacatgatcaactcaaccagacaatcac |
27680928 |
T |
|
| Q |
507 |
catctattctgattaattgttccactagttgacaacatgaaaaaatcaaaacctttgtccctcatcccttgaatagatagagatagaatcggaaaagctt |
606 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
27680927 |
catctattctgattaattgttcaacttgttgacaacatgaaaaaaccaaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagctt |
27680828 |
T |
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| Q |
607 |
ttggtgt-ctctctcagagtcaagaattaggagtctacattgaccgatcaatatgcgtataaagaa |
671 |
Q |
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| T |
27680827 |
ttagtgtcctctctc-gagtcaagaattaggagtttatattgactaatcaatatgcttataaagaa |
27680763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 421 - 590
Target Start/End: Original strand, 21891107 - 21891272
Alignment:
| Q |
421 |
taatgtatgcagctgaggcattctaacagatccgtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgatt |
520 |
Q |
| |
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| T |
21891107 |
taatgtatgcagctgaggcatcctaacagatcggtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaattgccatctatt----tt |
21891202 |
T |
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| Q |
521 |
aattgttccactagttgacaacatgaaaaaatcaaaacctttgtccctcatcccttgaatagatagagat |
590 |
Q |
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| T |
21891203 |
gattgttcaactctttgacaacataaaaaaaccaaaacctttgtcccccatcccttgaatagttagagat |
21891272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 582
Target Start/End: Original strand, 34660537 - 34660694
Alignment:
| Q |
421 |
taatgtatgcagctgaggcattctaacagatccgtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgatt |
520 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||||| ||||||| || | ||| ||||| ||||||||| || |
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| T |
34660537 |
taatgtatgcagctgaggcatcctaacagatgggtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaatcgccatctatt----tt |
34660632 |
T |
|
| Q |
521 |
aattgttccactagttgacaacatgaaaaaatcaaaacctttgtccctcatcccttgaatag |
582 |
Q |
| |
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||||||| ||| ||||||||||||||||| |||||||| |||||| |||||||||||||| |
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| T |
34660633 |
gattgttcaactctttgacaacatgaaaaaaccaaaacctctgtcccccatcccttgaatag |
34660694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 483 - 582
Target Start/End: Original strand, 2234571 - 2234666
Alignment:
| Q |
483 |
tgatcaactcaaccagacaatcaccatctattctgattaattgttccactagttgacaacatgaaaaaatcaaaacctttgtccctcatcccttgaatag |
582 |
Q |
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| T |
2234571 |
tgatcaattcgatcagacaatcgccatctattttgatt----gttcaactctttgacaacatgaaaaaaccaaaacctctgtcccccatcccttgaatag |
2234666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 582
Target Start/End: Original strand, 495536 - 495693
Alignment:
| Q |
421 |
taatgtatgcagctgaggcattctaacagatccgtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgatt |
520 |
Q |
| |
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||||||||||||||||||||| |||||||| | |||||||||||| |||||| |||||||| ||||||| || | ||| ||||| ||||||||| || |
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| T |
495536 |
taatgtatgcagctgaggcatcctaacagaccggtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaatcgccatctatt----tt |
495631 |
T |
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| Q |
521 |
aattgttccactagttgacaacatgaaaaaatcaaaacctttgtccctcatcccttgaatag |
582 |
Q |
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||||||| ||| ||||||||||||||||| |||||||| |||||| |||||||||||||| |
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| T |
495632 |
gattgttcaactctttgacaacatgaaaaaaccaaaacctctgtcccccatcccttgaatag |
495693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 582
Target Start/End: Original strand, 18193197 - 18193354
Alignment:
| Q |
421 |
taatgtatgcagctgaggcattctaacagatccgtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgatt |
520 |
Q |
| |
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||||||||||||||||||||| |||||||| | |||||||||||| |||||| |||||||| ||||||| || | ||| ||||| ||||||||| || |
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| T |
18193197 |
taatgtatgcagctgaggcatcctaacagaccggtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaatcgccatctatt----tt |
18193292 |
T |
|
| Q |
521 |
aattgttccactagttgacaacatgaaaaaatcaaaacctttgtccctcatcccttgaatag |
582 |
Q |
| |
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||||||| ||| ||||||||||||||||| |||||||| |||||| |||||||||||||| |
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| T |
18193293 |
gattgttcaactctttgacaacatgaaaaaaccaaaacctctgtcccccatcccttgaatag |
18193354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 421 - 637
Target Start/End: Complemental strand, 46151739 - 46151530
Alignment:
| Q |
421 |
taatgtatgcagctgaggcattctaacagatccgtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgatt |
520 |
Q |
| |
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||||| |||||||||| |||| |||||||| |||||||||||| || ||| |||||||| ||||||| || | ||| ||||| ||||||||| || |
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| T |
46151739 |
taatgcatgcagctgatgcatcctaacagactggtagacttgaacctttttcttacatgacctgatcaattcgatcaggcaatcgccatctatt----tt |
46151644 |
T |
|
| Q |
521 |
aattgttccactagttgacaacatgaaaaaatcaaaacctttgtccctcatcccttgaatagatagagatagaatcggaaaagcttttggtgtctctctc |
620 |
Q |
| |
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||||||| ||| |||||||||| |||||| |||||| |||||||| |||||||||||||| ||| ||| ||| | ||| || ||||||||| ||||| |
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| T |
46151643 |
gattgttcaactctttgacaacat-aaaaaaccaaaacatttgtcccccatcccttgaatagctagggatggaagggaaaatgcctttggtgtc-ctctc |
46151546 |
T |
|
| Q |
621 |
agagtcaagaattagga |
637 |
Q |
| |
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||||||||||||||| |
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| T |
46151545 |
-cagtcaagaattagga |
46151530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 582
Target Start/End: Complemental strand, 48919972 - 48919815
Alignment:
| Q |
421 |
taatgtatgcagctgaggcattctaacagatccgtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgatt |
520 |
Q |
| |
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||||||||| ||||||||||| |||||||| | |||||||||||| |||||| |||||||| ||||||| || | ||| ||||||||||||||| || |
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| T |
48919972 |
taatgtatgtagctgaggcatcctaacagaccggtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaatcaccatctatt----tt |
48919877 |
T |
|
| Q |
521 |
aattgttccactagttgacaacatgaaaaaatcaaaacctttgtccctcatcccttgaatag |
582 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||||| |||||| |||||||||||||| |
|
|
| T |
48919876 |
gattgttcaactctttgacaacatgaaaaaaccaaaacctctgtcccccatcccttgaatag |
48919815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 582
Target Start/End: Original strand, 21351936 - 21351982
Alignment:
| Q |
535 |
ttgacaacatgaaaaaatcaaaacctttgtccctcatcccttgaatag |
582 |
Q |
| |
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||||||||||||||||| |||||||| |||||| |||||||||||||| |
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| T |
21351936 |
ttgacaacatgaaaaaaccaaaacctctgtccc-catcccttgaatag |
21351982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 39186881 - 39186831
Alignment:
| Q |
355 |
tcacgacgttcaacttagcaattttgatatttttataagttgagttagaac |
405 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
39186881 |
tcacgacgtccaacttaacaattttgatatttttatcgattgagttagaac |
39186831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 33953212 - 33953245
Alignment:
| Q |
372 |
gcaattttgatatttttataagttgagttagaac |
405 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
33953212 |
gcaattttgatatttttatcagttgagttagaac |
33953245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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