View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0783-Insertion-6 (Length: 618)
Name: NF0783-Insertion-6
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 26578871 - 26579229
Alignment:
| Q |
13 |
gaccttaactcaatgactgagatccaatccagagtgtcgttgtgagannnnnnngc-aactgagagatttaggttttnnnnnnntatgaatttgtgtatt |
111 |
Q |
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| T |
26578871 |
gaccttaactcaatgactgagatccaatccagagtgtcgccgtgagattttttttccaactgagagatctaggttttaaaaaa--atgaatttgtgtatt |
26578968 |
T |
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| Q |
112 |
gaaaaaatca-gaacaatgatatatgtacgcctctaattcttctttactcattcaacacatcattttatttcaatctttctttttctatcatatcaacaa |
210 |
Q |
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| T |
26578969 |
gaaaaaatcaagaataatgatatatgtacgcctctaattcttctttactcattcaacacatcattttatttcaatatttctctttctatcatatcaacaa |
26579068 |
T |
|
| Q |
211 |
catatcatatcatgttatgtatccctttctctctcaagatgttaaagagttttgaatgttcatcaattttctccacatcatatcaacaacatatcacatc |
310 |
Q |
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| T |
26579069 |
catatcatatcatgttatgtatccctttcactctcaagatgtcaaagagttttggatgttcatcgattttctccatatcatatcaacaacatatcacatc |
26579168 |
T |
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| Q |
311 |
atgttctatatcggtttcactctcaagatgtcagagttttagatgttcgtcgattttctcc |
371 |
Q |
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| T |
26579169 |
acgttttatatcgctttcactctcaagatgtcagagttttatatgttcatcgattatctcc |
26579229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 420 - 526
Target Start/End: Original strand, 26579308 - 26579414
Alignment:
| Q |
420 |
cagatgcttctttttcctctaggggtttgtttaattaaataataacaataaggttgatatgtttggtaaggtaagtaattggttctattattgagaaatg |
519 |
Q |
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| T |
26579308 |
cagatgcttctttttcctctaggggtttgtttaattaaataataacaataaggttgatatgtttggtaaggtaagtaattggttctattattgagaaatg |
26579407 |
T |
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| Q |
520 |
atggcta |
526 |
Q |
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||||||| |
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| T |
26579408 |
atggcta |
26579414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 566 - 618
Target Start/End: Original strand, 26579454 - 26579506
Alignment:
| Q |
566 |
atgaaaagtagaacttgtctggttctgtgcatcaaaacaaacagattcaacta |
618 |
Q |
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| T |
26579454 |
atgaaaagtagaacttgtctggttctgtgcatcaaaacaaacagattcaacta |
26579506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 25680849 - 25680817
Alignment:
| Q |
189 |
tctttttctatcatatcaacaacatatcatatc |
221 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
25680849 |
tctttttctagcatatcaacaacatatcatatc |
25680817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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