View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0783-Insertion-8 (Length: 504)
Name: NF0783-Insertion-8
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783-Insertion-8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 7 - 504
Target Start/End: Original strand, 41129228 - 41129724
Alignment:
| Q |
7 |
aatttcaacaactttattaatccgtcgatttagtgcatgaactaaagaaatatatctaaaaattagccaaactcaatggtaactattggatttgcaagga |
106 |
Q |
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| T |
41129228 |
aatttcaacaactttattaatccgtcgatttagtgcatgaactaaagaaatatatctaaaaattagccaaactcaatggtaactattggatttgcaagga |
41129327 |
T |
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| Q |
107 |
atcataccactttgaccctttgtcactaggttccagttgacaacccttggctctactgcactgagaagctccaggaagaagagtccacttgacaagctct |
206 |
Q |
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| T |
41129328 |
atcataccactttgaccctttgtcactaggttccagttgacaacccttggctctactgcactgagaagctccaggaagaagagtccacttgacaagctct |
41129427 |
T |
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| Q |
207 |
tatcctgtgcacaaaattgcatccaaaatagtgtaactaataaatcattgttttagtctactgttatcgtgcatttaacgggaaataaaccatannnnnn |
306 |
Q |
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| T |
41129428 |
tatcctgtacacaaaattgcatccaaaatagtgtaactaataaatcattgttttagtctactgttatcgtgcatttaacaggaaataaaccatatttttt |
41129527 |
T |
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| Q |
307 |
ncaaaaaaccttgaaactctgaatgcgagacgttcttccaatgctattcacttttctgtttgcccatttaagaatatcagcatcacttatctcctttcct |
406 |
Q |
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| T |
41129528 |
tc-aaaaaccttgaaactctgaatgcgagacgttcttccaatgctattcacttttctgtttgcccatttaagaatatcagcatcacttatctcctttcct |
41129626 |
T |
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| Q |
407 |
tgggaatgagatctcaaatttctcaacaattgaagcattgtgaatctcatcaactgccacaataaagctgaaaaatagaacaaatcttcttagattat |
504 |
Q |
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| T |
41129627 |
tgggaatgagatctcaaatttctcaacagttgaagcattgtgaatctcatcaactgccacaataaagctgaaaaatagaccaaatcttcttagattat |
41129724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 476
Target Start/End: Complemental strand, 42971210 - 42971087
Alignment:
| Q |
353 |
ttcacttttctgtttgcccatttaagaatatcagcatcacttatctcctttccttgggaatgagatctcaaatttctcaacaattgaagcattgtgaatc |
452 |
Q |
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|||||||| |||| ||||| || || |||||||||||| | ||||| || |||||||| || |||||||| ||||||| | ||||||||| || |||| |
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| T |
42971210 |
ttcactttgttgttcgcccagtttagtatatcagcatcagtaatctctttaccttgggagtgtgatctcaagtttctcagaagttgaagcatggtaaatc |
42971111 |
T |
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| Q |
453 |
tcatcaactgccacaataaagctg |
476 |
Q |
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| T |
42971110 |
tcataagctgccacaaaaaagctg |
42971087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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