View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0783-Insertion-9 (Length: 500)

Name: NF0783-Insertion-9
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0783-Insertion-9
NF0783-Insertion-9
[»] chr5 (2 HSPs)
chr5 (8-292)||(493525-493806)
chr5 (319-500)||(493319-493500)
[»] chr8 (1 HSPs)
chr8 (71-123)||(9063891-9063943)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 493806 - 493525
Alignment:
Q  8 tgaaatggctctgt-aaatacaccatattggtggggtttaaccattggggggctaattagcaccggtgcacatggaagtacattgtggggtaaaggaagt 106  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  493806 tgaaatggctctgccaaatacaccatattggtggggtttaaccattggtggcctaattagcactggtgcacatggaagtacattgtggggtaaaggaagt 493707  T
Q  107 gctgttcatgagtatgtaacacatattagaatagttagccctgcaggatgtgaagatggatatgctaaggttcgaaatcttaatgaatctcaccaagatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  493706 gctgttcatgagtatgtaacacatattagaatagttagccctgcaggatgtgaagatggatatgctaaggttcgaaatcttaatgaatctcatcaagatc 493607  T
Q  207 ttaatgcagcaagagtttctttaggggttcttggagttatttctcaggtatatatgcatgctccttttgttttgtatgtctagtag 292  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    |||||||| |||||||||||||||||||||||||    
T  493606 ttaatgcagccagagtttctttaggggttcttggagttatttctcagg----tatgcatgttccttttgttttgtatgtctagtag 493525  T

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Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 319 - 500
Target Start/End: Complemental strand, 493500 - 493319
Alignment:
Q  319 tcattgttttgggtatttaacatgatgtttgacttgtgtaacttactattttataggttaccttacaattggaacccctcttcaagcgatctattacgta 418  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  493500 tcattgttttgggtttttaacatgatgtttgacttgtgtaacttgctattttataggttaccttacaattggaacccctcttcaaacgatctcttacgta 493401  T
Q  419 tttgacaaaaaacgatactgatttgggtgatgaattgatcacttttggcaacaagcatgaatttgccgatgtaacatggtat 500  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  493400 tttgacaaaaaacgattctgatttgggtgatgaattgatcacttttggtaaaaagcatgaatttgccgatgtaacatggtat 493319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 9063891 - 9063943
Alignment:
Q  71 ggtgcacatggaagtacattgtggggtaaaggaagtgctgttcatgagtatgt 123  Q
    ||||| |||||||| ||||||| ||| ||||||||||| |||||||| |||||    
T  9063891 ggtgctcatggaagcacattgtcggggaaaggaagtgcggttcatgactatgt 9063943  T

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