View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0783_high_9 (Length: 255)

Name: NF0783_high_9
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0783_high_9
NF0783_high_9
[»] chr2 (2 HSPs)
chr2 (33-164)||(3677982-3678113)
chr2 (33-66)||(29404192-29404225)
[»] chr3 (2 HSPs)
chr3 (33-68)||(46970674-46970709)
chr3 (33-73)||(31152931-31152971)
[»] chr4 (3 HSPs)
chr4 (35-68)||(1687934-1687967)
chr4 (79-148)||(13369080-13369148)
chr4 (44-116)||(23630835-23630907)
[»] chr1 (2 HSPs)
chr1 (33-74)||(24657087-24657128)
chr1 (162-194)||(52113335-52113367)
[»] scaffold0002 (1 HSPs)
scaffold0002 (36-68)||(452690-452722)
[»] chr7 (1 HSPs)
chr7 (162-194)||(15074464-15074496)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 3678113 - 3677982
Alignment:
Q  33 agttagtaagctacacccacttgtattttactaaaaaaccaataaacactattttatatcacttgaatttgaagggtacgtttgtcaatttaaccacgtc 132  Q
    |||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3678113 agttagtaagctacacccacttatattttactaaaaaacaaataagcactattttatatcacttgaatttgaagggtacgtttgtcaatttaaccacgtc 3678014  T
Q  133 tttcaaaacaaaacaacacaaatcataactgt 164  Q
    ||||||||||||||||||||||||||||||||    
T  3678013 tttcaaaacaaaacaacacaaatcataactgt 3677982  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 29404192 - 29404225
Alignment:
Q  33 agttagtaagctacacccacttgtattttactaa 66  Q
    |||||| |||||||||||||||||||||||||||    
T  29404192 agttagcaagctacacccacttgtattttactaa 29404225  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 46970674 - 46970709
Alignment:
Q  33 agttagtaagctacacccacttgtattttactaaaa 68  Q
    |||||| |||||||||||||||||||||||||||||    
T  46970674 agttagcaagctacacccacttgtattttactaaaa 46970709  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 31152931 - 31152971
Alignment:
Q  33 agttagtaagctacacccacttgtattttactaaaaaacca 73  Q
    |||||| ||| | ||||||||||||||||||||||||||||    
T  31152931 agttagcaagttgcacccacttgtattttactaaaaaacca 31152971  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 1687934 - 1687967
Alignment:
Q  35 ttagtaagctacacccacttgtattttactaaaa 68  Q
    ||||||||||||||||||||||||||||| ||||    
T  1687934 ttagtaagctacacccacttgtattttacgaaaa 1687967  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 13369148 - 13369080
Alignment:
Q  79 cactattttatatcacttgaatttgaagggtacgtttgtcaatttaaccacgtctttcaaaacaaaacaa 148  Q
    ||||||||||||||||||||| || |||| ||  |||||||||||||| |  | ||||||||||||||||    
T  13369148 cactattttatatcacttgaagttaaaggctagttttgtcaatttaacaaaat-tttcaaaacaaaacaa 13369080  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 23630835 - 23630907
Alignment:
Q  44 tacacccacttgtattttactaaaaaaccaataaacactattttatatcacttgaatttgaagggtacgtttg 116  Q
    |||||||||||||||||||| |||||| ||||   ||||||||||  ||||||||| || |||| ||| ||||    
T  23630835 tacacccacttgtattttaccaaaaaatcaatttccactattttaactcacttgaaattaaaggatacttttg 23630907  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 24657128 - 24657087
Alignment:
Q  33 agttagtaagctacacccacttgtattttactaaaaaaccaa 74  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  24657128 agttagcaagccacacccacttatattttactaaaaaaccaa 24657087  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 52113367 - 52113335
Alignment:
Q  162 tgtctaaaattgtgtatctatttatcatttctc 194  Q
    ||||||||||||||| |||||||||||||||||    
T  52113367 tgtctaaaattgtgtgtctatttatcatttctc 52113335  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 452690 - 452722
Alignment:
Q  36 tagtaagctacacccacttgtattttactaaaa 68  Q
    ||||||||||||||||||| |||||||||||||    
T  452690 tagtaagctacacccacttatattttactaaaa 452722  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 15074464 - 15074496
Alignment:
Q  162 tgtctaaaattgtgtatctatttatcatttctc 194  Q
    ||||||||||||||| |||||||||||||||||    
T  15074464 tgtctaaaattgtgtgtctatttatcatttctc 15074496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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