View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0783_low_10 (Length: 309)
Name: NF0783_low_10
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 53127402 - 53127624
Alignment:
| Q |
1 |
taatccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctatattgtttaccgatttcataaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53127402 |
taatccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctatattgtttaccgatttcataaacac |
53127501 |
T |
|
| Q |
101 |
gacccagcccaccaataaccagctgcttgagataaagttctggagcaattctcatgaataatttcatgtcaagttcattgtgatgagttacaaatggacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53127502 |
gacccagcccaccaataaccagctgcttgagataaagttctggagcaattctcatgaataatttcatgtcaagttcattgtgatgagttgcaaatggacg |
53127601 |
T |
|
| Q |
201 |
agctgctgctccaccggcaatct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
53127602 |
agctgctgctccaccggcaatct |
53127624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 53109574 - 53109781
Alignment:
| Q |
15 |
catatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctatattgtttaccgatttcataaacacgacccagcccacca |
114 |
Q |
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|||||| |||||||| | ||||||||||||||||| |||| ||| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |
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| T |
53109574 |
catataaaactcacatgcagtgaactcaggattgtgtgtcatgtctataccctcatttctaaattgtttaccaatttcataaacacgttccagcccacca |
53109673 |
T |
|
| Q |
115 |
ataaccagctgcttgagataaagttctggagcaattctcatgaataatttcatgtcaagttcattgtgatgagttacaaatggacgagctgctgctccac |
214 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53109674 |
acaaccagctgcttgagataaagttctggagcaattctcatgaataacttcaagtcaagttcattgtgatgagttacaaatgggcgagctgctgctccac |
53109773 |
T |
|
| Q |
215 |
cggcaatc |
222 |
Q |
| |
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|||||||| |
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|
| T |
53109774 |
cggcaatc |
53109781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 53114996 - 53115204
Alignment:
| Q |
15 |
catatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctatattgtttaccgatttcataaacacgacccagcccacca |
114 |
Q |
| |
|
|||||| |||||||| || |||||||| ||||| || || | ||| ||| ||||||||||| |||||||||| |||||||||||||| ||| ||||||| |
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| T |
53114996 |
catataaaactcacaggtagtgaactccggattatgtgtaaggtctatatcctcatttctaaattgtttaccaatttcataaacacgttccatcccacca |
53115095 |
T |
|
| Q |
115 |
ataaccagctgcttgagataaagttctggagcaattctcatgaataatttcatgtcaagttcattgtgatgagttacaaatggacgagctgctgctccac |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
53115096 |
acaaccagctgcttgagataaagttctggagcaattctcatgaataacttcaagtcaagttcattgtggtgagttacaaatgggcgagctgctgctccac |
53115195 |
T |
|
| Q |
215 |
cggcaatct |
223 |
Q |
| |
|
| ||||||| |
|
|
| T |
53115196 |
cagcaatct |
53115204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 15839583 - 15839376
Alignment:
| Q |
15 |
catatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctatattgtttaccgatttcataaacacgacccagcccacca |
114 |
Q |
| |
|
||||||||||||||| || || || |||||||| || ||||| || || |||||||| ||| |||||||||| |||||||||||||| ||| |||||| |
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|
| T |
15839583 |
catatagaactcacaggtagtaaattcaggattatgagtcaaatctatgccctcattcctaaattgtttaccaatttcataaacacggttcagaccacca |
15839484 |
T |
|
| Q |
115 |
ataaccagctgcttgagataaagttctggagcaattctcatgaataatttcatgtcaagttcattgtgatgagttacaaatggacgagctgctgctccac |
214 |
Q |
| |
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| ||||| || ||||||||| ||||||||||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||| ||||| || || |||| |
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| T |
15839483 |
acaaccaacttcttgagatagagttctggagcaattctcatgaataatctcatgttaaggtcattatgatgagttacaaatggccgagcagcagcaccac |
15839384 |
T |
|
| Q |
215 |
cggcaatc |
222 |
Q |
| |
|
| |||||| |
|
|
| T |
15839383 |
cagcaatc |
15839376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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