View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0783_low_14 (Length: 279)
Name: NF0783_low_14
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 49120750 - 49120646
Alignment:
| Q |
28 |
catcatttcccctttcacgtgaataaaagtgagcagttaatttttgtacccaaaaataaatttcagcagttatttttccttttnnnnnnngtgagtagtt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
49120750 |
catcatttcccctttcacgtgaataaaagtgagcagttaatttttgtacccaaaaataaattttagcagttatttttccttttaaaaaaagtgagtagtt |
49120651 |
T |
|
| Q |
128 |
aattt |
132 |
Q |
| |
|
||||| |
|
|
| T |
49120650 |
aattt |
49120646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 18133540 - 18133490
Alignment:
| Q |
28 |
catcatttcccctttcacgtgaataaaagtgagcagttaatttttgtaccc |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18133540 |
catcatttcccctttcacgtgaataaaagtgagcagttaatttttgtaccc |
18133490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 49118934 - 49118854
Alignment:
| Q |
143 |
cttttgtcgttttcaagtgttgttagaaaaatattttatnnnnnnnntataacttgacttaaatgaaaaactattaggattg |
224 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
49118934 |
cttttgtcgttttcaagtgttgctagaaaatcattttataaaaaaaa-atatcttgacttaaatgaaaaactattaggattg |
49118854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 49118450 - 49118418
Alignment:
| Q |
233 |
aaggaggattaacttttttctaaaaatactttt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
49118450 |
aaggaggattaacttttttctaaaaatactttt |
49118418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6961 times since January 2019
Visitors: 5773