View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0783_low_2 (Length: 550)
Name: NF0783_low_2
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 876545 - 876021
Alignment:
| Q |
18 |
agttcctgtatacagccacctacgttcaattcttgaattcaccaaaagattggttcatctaaaccaaaacattcatatcacatgcattaacccaacattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
876545 |
agttcctgtatacagccacctacgttcaattcttgaattcaccaaaagattggttcatctaaaccaaaacattcatgtcacatgcattaacccaacattt |
876446 |
T |
|
| Q |
118 |
agttcttcaatttgcaacaatgtcaaatccctctttgaaactcttccatcaaacataaactacatgtttcttccaccgataaatttagaagacttaccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
876445 |
agttcttcaatttgcaacaatgtcaaatccctctttgaaactcttccatcaaacataaactacatgtttcttccaccgataaatttagaagacttaccaa |
876346 |
T |
|
| Q |
218 |
aagatattcaccctgcgctcaaagttgaagccactttacaccgttctattccttcgatttatgatgcattgaacacgttacattctagttcaaaacttgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
876345 |
aagatattcaccctgcgctcaaagttgaagccactttacaccgttctattccttcgatttatgatgcattggacacgttacattctagttcaaaacttgt |
876246 |
T |
|
| Q |
318 |
cgcggttatttctgatggtttaataaacgaaatgttacgattaaccaagaaactcgatattttagcctactcatattttccttccacaaccatgttacta |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
876245 |
cgcggttatttctgatggtttaataaacgaagtgttacgattaaccaagaaactcgatattttagcctactcatattttccttccacaaccatgttacta |
876146 |
T |
|
| Q |
418 |
tcgctttgtttgcattcttcaagtctagacaaaacaatttcttccgcaaataaagacctatcagaaccattagagattcctggttgcataccgattcatt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
876145 |
tcgctttgtttgcattcttcaagtctagacaaaacaatttcttccgcaaataaagacctattagaaccattagagattcctggttgcataccgattcatg |
876046 |
T |
|
| Q |
518 |
gtactcatctcccggaccctatgct |
542 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
876045 |
gtactgatctcccggaccctatgct |
876021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 846095 - 845571
Alignment:
| Q |
18 |
agttcctgtatacagccacctacgttcaattcttgaattcaccaaaagattggttcatctaaaccaaaacattcatatcacatgcattaacccaacattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
846095 |
agttcctgtatacagccacctacgttcaattcttgaattcaccaaaagattggttcatctaaaccaaaacattcatgtcacatgcattaaccccacattt |
845996 |
T |
|
| Q |
118 |
agttcttcaatttgcaacaatgtcaaatccctctttgaaactcttccatcaaacataaactacatgtttcttccaccgataaatttagaagacttaccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
845995 |
ggttcttcaatttgcaacaatgtcaaatccctctttgaatctcttccatcaaacataaactacatgtttcttccaccaataaatttagaagatttaccaa |
845896 |
T |
|
| Q |
218 |
aagatattcaccctgcgctcaaagttgaagccactttacaccgttctattccttcgatttatgatgcattgaacacgttacattctagttcaaaacttgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
845895 |
aagatattcaccctgcgctcaaagttgaagccactttacaccgttctattccttcgatttatgatgtattgaacacgttacattctagttcaaaacttgt |
845796 |
T |
|
| Q |
318 |
cgcggttatttctgatggtttaataaacgaaatgttacgattaaccaagaaactcgatattttagcctactcatattttccttccacaaccatgttacta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
845795 |
tgcggttatttctgatggtttaataaacgaagtgttacgattaaccaagaaactcgatattttagcctactcatattttccttccacaaccatgttacta |
845696 |
T |
|
| Q |
418 |
tcgctttgtttgcattcttcaagtctagacaaaacaatttcttccgcaaataaagacctatcagaaccattagagattcctggttgcataccgattcatt |
517 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |
|
|
| T |
845695 |
tcgctttgtttgcattcttcaaatctagacaaaacaatttcttccgcaaataaagacctattagaaccattagagattcccggttgcataccgattaata |
845596 |
T |
|
| Q |
518 |
gtactcatctcccggaccctatgct |
542 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
845595 |
gtactgatctcccggaccctatgct |
845571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 153 - 509
Target Start/End: Complemental strand, 566743 - 566397
Alignment:
| Q |
153 |
tgaaactcttccatcaaacataaactacatgtttcttccaccgataaatttagaagacttaccaaaagatattcaccctgcgctcaaagttgaagccact |
252 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||| |||||||| ||||||||||||| ||||| |||||||||||||||| || |||||| || |
|
|
| T |
566743 |
tgaaattcttccatcaaacgtgaactacatgttccttccacccgtaaatttagaagatttaccgcaagatattcaccctgcccttaaagttcaac----- |
566649 |
T |
|
| Q |
253 |
ttacaccgttctattccttcgatttatgatgcattgaacacgttacattctagttcaaaacttgtcgcggttatttctgatggtttaataaacgaaatgt |
352 |
Q |
| |
|
|||| ||||| ||||| || ||||||||||||||| |||||| | |||| || || | || || |||| ||||||| || ||| ||| |
|
|
| T |
566648 |
---------tctaatcctttaatttacgaagcattgaacacgttaaattctaatgcaaactttcccgtgcttgttgctgacggtttaaacaatgaagtgt |
566558 |
T |
|
| Q |
353 |
tacgattaaccaagaaactcgatattttagcctactcatattttccttccacaaccatgttactatcgctttg----tttgcattcttcaagtctagaca |
448 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||| | |||| | |
|
|
| T |
566557 |
tacgattagctaagaaactagatattttagcctattcatattttccatccacaaccgtgttactatcactttgttaatttgctttcttcaaatatagaga |
566458 |
T |
|
| Q |
449 |
aaacaatttcttccgcaaataaagacctatcagaaccattagagattcctggttgcatacc |
509 |
Q |
| |
|
||||||||||||| || | |||||||||| ||||||||||| || |||| ||||||||| |
|
|
| T |
566457 |
gaacaatttcttccacatacaaagacctattagaaccattagcgactccttattgcatacc |
566397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 18189600 - 18189640
Alignment:
| Q |
155 |
aaactcttccatcaaacataaactacatgtttcttccaccg |
195 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
18189600 |
aaactcttccatcaaatatcaaccacatgtttcttccaccg |
18189640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6418 times since January 2019
Visitors: 5768