View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0783_low_8 (Length: 371)
Name: NF0783_low_8
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0783_low_8 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: scaffold0657 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 6744 - 7069
Alignment:
| Q |
9 |
caacaaaatagaagaaagcacatttataacattgatagcaagtagcaacatttatttccagccacaactacatctctacaactcaaataacaagagagnn |
108 |
Q |
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| T |
6744 |
caacaaaatagaagaaagcacatttataaaattgatagcaa-------cctttattttcagcaacaactacatccctacaactcaaataacaagaga--- |
6833 |
T |
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| Q |
109 |
nnnnnntacatgcccttatttgnnnnnnn--tatatctatataatagcaagctttaatgatggtcatgattaattattttaaacagaatccaatatactc |
206 |
Q |
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| T |
6834 |
aaaaaatacatgcccttatgtaaaaaaataatatatctaaataatagcaggctttaatgatggtcatgattaattattttaaacagaatccaaaatactc |
6933 |
T |
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| Q |
207 |
accaaatcataaaccctttcattttcttctcccaaataaatctatacaaactttaacttaacaagaaatgggttaatttaataatcttaacttcatacag |
306 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6934 |
accaaatcagaaaccctttcattttcttctcccaaataaatctatacagactttaacttaacaagaaatgggttaatttaataatcttaacttcatacaa |
7033 |
T |
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| Q |
307 |
ttatttcattatctttcacaaaaacaaatccaaaac |
342 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7034 |
ttatttcattatctttcacaaaaacaaatccaaaac |
7069 |
T |
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