View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0783_low_9 (Length: 313)

Name: NF0783_low_9
Description: NF0783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0783_low_9
NF0783_low_9
[»] chr6 (11 HSPs)
chr6 (17-161)||(304976-305120)
chr6 (17-166)||(19803376-19803539)
chr6 (17-166)||(33775566-33775729)
chr6 (18-165)||(33776153-33776314)
chr6 (17-166)||(644098-644261)
chr6 (18-161)||(305552-305709)
chr6 (18-161)||(644685-644842)
chr6 (24-148)||(26276090-26276228)
chr6 (97-161)||(26275431-26275495)
chr6 (33-161)||(22509758-22509899)
chr6 (97-161)||(23950049-23950113)
[»] chr3 (15 HSPs)
chr3 (20-166)||(1194094-1194254)
chr3 (18-165)||(53302947-53303108)
chr3 (17-161)||(11503680-11503838)
chr3 (18-166)||(48222910-48223072)
chr3 (17-161)||(11504268-11504426)
chr3 (17-161)||(47861779-47861936)
chr3 (17-161)||(48222327-48222485)
chr3 (19-161)||(47862369-47862525)
chr3 (18-142)||(53303541-53303679)
chr3 (97-161)||(6588548-6588611)
chr3 (102-166)||(30733608-30733672)
chr3 (97-136)||(11195828-11195867)
chr3 (24-89)||(11195718-11195783)
chr3 (101-161)||(6589314-6589373)
chr3 (110-142)||(25749094-25749126)
[»] chr1 (21 HSPs)
chr1 (23-161)||(35813954-35814092)
chr1 (17-161)||(36180314-36180472)
chr1 (17-161)||(11625877-11626035)
chr1 (18-161)||(249685-249842)
chr1 (22-161)||(47708418-47708571)
chr1 (17-166)||(250267-250429)
chr1 (18-166)||(11625284-11625445)
chr1 (18-161)||(36179719-36179875)
chr1 (97-161)||(45880758-45880822)
chr1 (98-161)||(9088440-9088503)
chr1 (98-161)||(45881506-45881569)
chr1 (101-161)||(9087692-9087752)
chr1 (97-161)||(32517560-32517624)
chr1 (98-161)||(32516813-32516876)
chr1 (98-161)||(35813296-35813358)
chr1 (93-157)||(42308890-42308954)
chr1 (85-161)||(51590749-51590825)
chr1 (17-88)||(29112992-29113063)
chr1 (103-160)||(27039099-27039155)
chr1 (24-91)||(45881418-45881485)
chr1 (17-59)||(42308798-42308840)
[»] chr8 (16 HSPs)
chr8 (17-166)||(29555505-29555668)
chr8 (17-157)||(5156558-5156712)
chr8 (18-166)||(28824122-28824284)
chr8 (18-161)||(5157136-5157293)
chr8 (18-161)||(38376209-38376366)
chr8 (18-161)||(44445970-44446127)
chr8 (17-166)||(44446551-44446713)
chr8 (17-166)||(28824708-28824870)
chr8 (18-161)||(29556099-29556256)
chr8 (17-161)||(38376798-38376954)
chr8 (85-161)||(5157961-5158037)
chr8 (98-161)||(39774316-39774379)
chr8 (97-161)||(39773568-39773632)
chr8 (24-91)||(5157321-5157388)
chr8 (75-161)||(14857914-14858000)
chr8 (105-157)||(41721117-41721169)
[»] chr5 (15 HSPs)
chr5 (17-166)||(31230021-31230184)
chr5 (18-166)||(4276156-4276318)
chr5 (17-166)||(4275562-4275725)
chr5 (17-166)||(2601423-2601585)
chr5 (18-161)||(2600835-2600991)
chr5 (18-161)||(31229432-31229589)
chr5 (178-254)||(6858152-6858228)
chr5 (98-161)||(3341588-3341651)
chr5 (98-161)||(3358497-3358560)
chr5 (98-161)||(3342336-3342399)
chr5 (98-161)||(3359245-3359308)
chr5 (92-157)||(5233770-5233835)
chr5 (86-161)||(11377287-11377361)
chr5 (17-59)||(5233886-5233928)
chr5 (97-161)||(11376944-11377009)
[»] chr4 (20 HSPs)
chr4 (17-166)||(51539819-51539982)
chr4 (18-166)||(4206204-4206366)
chr4 (17-166)||(4206791-4206954)
chr4 (17-166)||(39232101-39232264)
chr4 (18-161)||(51540414-51540571)
chr4 (17-166)||(49604001-49604163)
chr4 (18-161)||(49603420-49603577)
chr4 (24-161)||(2519560-2519710)
chr4 (18-161)||(39232695-39232851)
chr4 (33-160)||(46513595-46513736)
chr4 (97-161)||(2520305-2520369)
chr4 (98-161)||(29379725-29379788)
chr4 (97-161)||(29380472-29380536)
chr4 (100-146)||(25699307-25699353)
chr4 (98-161)||(26355228-26355290)
chr4 (101-162)||(2528674-2528734)
chr4 (97-140)||(42020403-42020446)
chr4 (97-161)||(42020994-42021060)
chr4 (42-91)||(2528601-2528650)
chr4 (105-161)||(14090723-14090778)
[»] chr7 (16 HSPs)
chr7 (17-161)||(33255723-33255881)
chr7 (17-166)||(47942009-47942171)
chr7 (18-166)||(47942595-47942757)
chr7 (18-166)||(47948025-47948187)
chr7 (18-161)||(33256313-33256469)
chr7 (97-161)||(7331114-7331178)
chr7 (98-161)||(7331862-7331925)
chr7 (97-161)||(31724173-31724237)
chr7 (86-161)||(34151600-34151675)
chr7 (86-161)||(34175449-34175524)
chr7 (97-161)||(48843180-48843245)
chr7 (105-161)||(22377356-22377412)
chr7 (24-91)||(7331774-7331841)
chr7 (97-161)||(16959595-16959657)
chr7 (101-166)||(34152618-34152683)
chr7 (101-166)||(34174441-34174506)
[»] chr2 (14 HSPs)
chr2 (18-166)||(1388991-1389153)
chr2 (18-161)||(22424626-22424783)
chr2 (17-166)||(22424031-22424194)
chr2 (24-161)||(29982814-29982965)
chr2 (24-161)||(37645068-37645219)
chr2 (97-161)||(37644408-37644472)
chr2 (98-161)||(21647603-21647666)
chr2 (97-161)||(29982154-29982218)
chr2 (98-161)||(21648351-21648414)
chr2 (98-161)||(15321815-15321879)
chr2 (108-161)||(15167822-15167875)
chr2 (32-91)||(25217010-25217069)
chr2 (97-136)||(15322641-15322680)
chr2 (23-91)||(15322553-15322621)
[»] scaffold0181 (3 HSPs)
scaffold0181 (98-160)||(18060-18122)
scaffold0181 (97-161)||(17312-17376)
scaffold0181 (24-91)||(17972-18039)
[»] scaffold0178 (3 HSPs)
scaffold0178 (97-161)||(5144-5208)
scaffold0178 (20-87)||(5030-5097)
scaffold0178 (97-165)||(4749-4816)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 305120 - 304976
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgggtgtgttataaaggttatttttgta 116  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  305120 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggatgtattataaaggttatttttgta 305021  T
Q  117 tttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||    
T  305020 tttttagggggcctaaagagatattgggggggcctaaaaagcaat 304976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 19803539 - 19803376
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg--------------gtgtgttataa 102  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||| ||||||    
T  19803539 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggtatgtaactacggggtgtattataa 19803440  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  19803439 aggttatttttgtattttcagggggcctaaagagatattgagggggcctaaaaagcaatattca 19803376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 33775729 - 33775566
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||    
T  33775729 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 33775630  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  33775629 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 33775566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 33776153 - 33776314
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  33776153 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 33776252  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattc 165  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  33776253 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatattc 33776314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 644261 - 644098
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||               ||| ||||||    
T  644261 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactatcggtatgtaactaccgaatgtattataa 644162  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  644161 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 644098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 305552 - 305709
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  305552 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 305651  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  305652 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 305709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 644685 - 644842
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  644685 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 644784  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  644785 ggttatttttgtatttttagggggcctaaagagatattgggggggtctaaaaagcaat 644842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 26276090 - 26276228
Alignment:
Q  24 ttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgc--------------actaccgggtgtgttataaaggttat 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||              |||||||| ||| |||||||||||||    
T  26276090 ttgaaaatgtgcctccggtatgtacataccgaaggtttaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaaggttat 26276189  T
Q  110 ttttgtatttttagggggcctaaaaagatattgaggggg 148  Q
    ||||||||||||||||| |||||| |||||||| |||||    
T  26276190 ttttgtatttttaggggacctaaagagatattggggggg 26276228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 26275495 - 26275431
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  26275495 ttataaaggttatttttgtatttttagagggcctaaagagatattgagggggcctaaaaagcaat 26275431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 22509899 - 22509758
Alignment:
Q  33 tgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcac----------------taccgggtgtgttataaaggttatttttgta 116  Q
    ||||||||| |||||||||||||||||||||||| |||||| |||||||||||                |||||| ||| ||||||| ||||||||||||    
T  22509899 tgcctccggcatgtacataccgaaggtttaaaatgtgaaaa-ttaaaatgcactaccggtatgtaactataccggatgtattataaacgttatttttgta 22509801  T
Q  117 tttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||| ||||| |||||||  ||||||||||||||||||    
T  22509800 tttttagggggtctaaagagatatt--gggggcctaaaaagcaat 22509758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 23950049 - 23950113
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||  || ||||||||||||||    
T  23950049 ttataaaggttaattttgtatttttagggggcctaaagagatattggaggagcctaaaaagcaat 23950113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 1194254 - 1194094
Alignment:
Q  20 aaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg--------------gtgtgttataaagg 105  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||| |||||||||    
T  1194254 aaatttgtaaatgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggtatgtaactaccgggtgtattataaagg 1194155  T
Q  106 ttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  1194154 ttatttttgtatttttggggggcctaaagagatattgagggggcctaaaaagcaatattca 1194094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 53303108 - 53302947
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  53303108 gaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 53303009  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattc 165  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  53303008 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatattc 53302947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 11503838 - 11503680
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||    
T  11503838 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 11503739  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  11503738 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 11503680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 48222910 - 48223072
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  48222910 gaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 48223009  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  48223010 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 48223072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 11504268 - 11504426
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcac--------------taccgggtgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||              |||||| ||| ||||||    
T  11504268 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcacatccgggatgtaactaccggatgtattataa 11504367  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  11504368 aggttatttttgtatttttaaggggcctaaaaagatattgggggagcctaaaaagcaat 11504426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 47861936 - 47861779
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcac--------------taccgggtgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||              |||||| ||| ||||||    
T  47861936 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcacatccggtatgtaactaccggatgtattataa 47861837  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  47861836 aggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaat 47861779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 48222485 - 48222327
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactacc--------------gggtgtgttataa 102  Q
    |||||||||| |||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||              || ||| ||||||    
T  48222485 tgaaaatttgtaaatatgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactacctgtatgtaactaccggatgtattataa 48222386  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  48222385 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 48222327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 47862369 - 47862525
Alignment:
Q  19 aaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaag 104  Q
    |||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||||    
T  47862369 aaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaag 47862468  T
Q  105 gttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  47862469 gttatttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaat 47862525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 53303541 - 53303679
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||               |||||||||||    
T  53303541 gaaaatttgtaaatgtgcccctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtgttataaa 53303640  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattg 142  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  53303641 ggttatttttgtatttttagggggcctaaagagatattg 53303679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 6588611 - 6588548
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  6588611 ttataaaggttatttttgtatttttagggggcctaaagagatattgaggggg-ctaaaaagcaat 6588548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 30733672 - 30733608
Alignment:
Q  102 aaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||| |||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||    
T  30733672 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcttca 30733608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 11195828 - 11195867
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaag 136  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  11195828 ttataaaggttatttttgtatttttagggggccttaaaag 11195867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 11195718 - 11195783
Alignment:
Q  24 ttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactacc 89  Q
    ||||||| ||||||| |||||||||||| |||||||| ||||| |||||| | |||||| ||||||    
T  11195718 ttgaaaatgtgcctctggtatgtacatatcgaaggttcaaaatgtgaaaaataaaaatgaactacc 11195783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 6589314 - 6589373
Alignment:
Q  101 aaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||| ||||||| | |||||||||| |||||| |||||||||||||| |||||    
T  6589314 aaaggttattttcgtatttt-acggggcctaaagagatatcgagggggcctaaaaggcaat 6589373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 25749094 - 25749126
Alignment:
Q  110 ttttgtatttttagggggcctaaaaagatattg 142  Q
    |||||||||||||||||||||||||||||||||    
T  25749094 ttttgtatttttagggggcctaaaaagatattg 25749126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 35813954 - 35814092
Alignment:
Q  23 tttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgggtgtgttataaaggttatttttgtattttta 122  Q
    |||||||| |||||| |||||||||||||||| ||||  |||||  ||||| |||||||| ||||||||  || ||||||||||||||||||||||||||    
T  35813954 tttgaaaatgtgccttcggtatgtacataccggaggtgcaaaatgagaaaagttaaaatgaactaccggaagtcttataaaggttatttttgtattttta 35814053  T
Q  123 gggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  35814054 gggggcctaaagagatattgagggggcctaaaaagcaat 35814092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 36180314 - 36180472
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||    
T  36180314 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 36180413  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  36180414 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 36180472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 11625877 - 11626035
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgc--------------actaccgggtgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||              |||||||| ||| ||||||    
T  11625877 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 11625976  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    || |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  11625977 agattatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 11626035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 249842 - 249685
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccg--------------ggtgtgttataaa 103  Q
    ||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||              | ||| |||||||    
T  249842 gaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccgatatgtaactaccggatgtattataaa 249743  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  249742 ggttatttttgtatttttagggggtctaaagagatattgggggggcctaaaaagcaat 249685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 47708418 - 47708571
Alignment:
Q  22 atttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactacc--------------gggtgtgttataaaggtt 107  Q
    ||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||              || ||| |||||||||||    
T  47708418 atttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccagtatgtaactaccggatgtattataaaggtt 47708517  T
Q  108 atttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  47708518 atttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 47708571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 250267 - 250429
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactacc--------------gggtgtgttataa 102  Q
    |||||||||| |||  ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||              || ||| ||||||    
T  250267 tgaaaatttgtaaatatgcctccggtatgtacatatcgaaggtgtaaaatgtgaaaatttaaaatgcactacctgtatgtaactaccggatgtattataa 250366  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  250367 aggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatcttca 250429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 11625445 - 11625284
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  11625445 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 11625346  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
     ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  11625345 tgttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatcttca 11625284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 36179875 - 36179719
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcacta--------------ccgggtgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||              |||| ||| |||||||    
T  36179875 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatttgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 36179776  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||    
T  36179775 ggttatttttgtatttttaggaggcctaaagagatattg-ggggacctaaaaagcaat 36179719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 45880822 - 45880758
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45880822 ttataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 45880758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 9088440 - 9088503
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9088440 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 9088503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 45881506 - 45881569
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45881506 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 45881569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 9087752 - 9087692
Alignment:
Q  101 aaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9087752 aaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 9087692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 32517560 - 32517624
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  32517560 ttataaaggttatttttgtatttttagggggcctaaagagatattgaggggttctaaaaagcaat 32517624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 32516876 - 32516813
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||    
T  32516876 tataaaggttatttttgtatttttaggggacttaaagagatattgagggggcctaaaaagcaat 32516813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 35813358 - 35813296
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  35813358 tataaaggttatttttgtatttttagggggcctaaagagatattga-ggggcctaaaaagcaat 35813296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 42308890 - 42308954
Alignment:
Q  93 tgtgttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaag 157  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  42308890 tgtgttgtgaaggttatttttgtatttttaggaggcctaaaaagatattggaggggcctaaaaag 42308954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 51590749 - 51590825
Alignment:
Q  85 ctaccgggtgtgttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||| ||| |||| |||| |||||||||| |||||||| ||||||| |||||||| ||||| ||||||||||||    
T  51590749 ctaccggatgtattattaagggtatttttgtagttttagggtgcctaaagagatattgtgggggtctaaaaagcaat 51590825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 29112992 - 29113063
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactac 88  Q
    |||||||||||||| ||||||||| |||||||| |  ||||||| ||||| || ||||||||||||||||||    
T  29112992 tgaaaatttgaaaaagtgcctccgatatgtacacattgaaggttcaaaatgtgtaaatttaaaatgcactac 29113063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 27039099 - 27039155
Alignment:
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaa 160  Q
    |||||| ||| ||||||||||||||| ||||||||||||| ||||||||||| |||||    
T  27039099 aggttaatttcgtatttttagggggcttaaaaagatattg-gggggcctaaagagcaa 27039155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 45881418 - 45881485
Alignment:
Q  24 ttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg 91  Q
    ||||||| |||||| |||||||||||||||| ||||  |||||  ||||| |||||||| ||||||||    
T  45881418 ttgaaaatgtgccttcggtatgtacataccggaggtgcaaaatgagaaaaattaaaatgaactaccgg 45881485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 42308798 - 42308840
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggt 59  Q
    ||||||| ||||||  |||||||||||||||||||||||||||    
T  42308798 tgaaaatgtgaaaatatgcctccggtatgtacataccgaaggt 42308840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 29555668 - 29555505
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcac--------------taccgggtgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||              |||||| ||| ||||||    
T  29555668 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcacatccgggatgtaactaccggatgtattataa 29555569  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  29555568 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 29555505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 5156712 - 5156558
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcacta--------------ccgggtgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||              |||| ||| ||||||    
T  5156712 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 5156613  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaag 157  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  5156612 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaag 5156558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 28824284 - 28824122
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  28824284 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 28824185  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  28824184 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 28824122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 5157136 - 5157293
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  5157136 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 5157235  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  5157236 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 5157293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 38376366 - 38376209
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  38376366 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 38376267  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  38376266 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 38376209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 44446127 - 44445970
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  44446127 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 44446028  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  44446027 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 44445970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 44446551 - 44446713
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg-gtgt------------gttataaa 103  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||             |||||||    
T  44446551 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtttataaa 44446650  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  44446651 ggttatttttgtatttttagggggcctaaagagatattgggggggcctgaaaagcaatcttca 44446713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 28824708 - 28824870
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||    
T  28824708 tgaaaatttgtaaatgtgcctccagtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 28824807  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  28824808 aggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatcttca 28824870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 29556099 - 29556256
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  29556099 gaaaatttgtaaatgtgtctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 29556198  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||    
T  29556199 ggttatttttgtatttttagggggcctaaagagatattggggggacctaaaaagcaat 29556256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 38376798 - 38376954
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgc--------------actaccgggtgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||              |||||||| ||| ||||||    
T  38376798 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcacatccggtatgtaactaccggatgtattataa 38376897  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    || ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  38376898 agattatttttgta-ttttagggggcctaaagagatattg-gggggcctaaaaagcaat 38376954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 5157961 - 5158037
Alignment:
Q  85 ctaccgggtgtgttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  5157961 ctaccggatgtcttataaaggttatttttgtatttttaggaggcctaaagagatattgagggggcctaaaaagcaat 5158037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 39774316 - 39774379
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39774316 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 39774379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 39773632 - 39773568
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  39773632 ttataaaggttatttttgaatttttagggggcctaaagagatattgagggggcctaaaaagcaat 39773568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 5157388 - 5157321
Alignment:
Q  24 ttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg 91  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  5157388 ttgaaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccgg 5157321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 14857914 - 14858000
Alignment:
Q  75 ttaaaatgcactaccgggtgtgttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||  |||||||| ||| |||| ||||  |||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  14857914 ttaaaataaactaccggatgtattattaagggcatttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaat 14858000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 41721169 - 41721117
Alignment:
Q  105 gttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaag 157  Q
    |||| ||||||  |||||| |||||||||||||||| |||||| |||||||||    
T  41721169 gttaattttgtcattttagagggcctaaaaagatatggaggggacctaaaaag 41721117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 31230021 - 31230184
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||    
T  31230021 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 31230120  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  31230121 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 31230184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 4276156 - 4276318
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  4276156 gaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 4276255  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  4276256 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 4276318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 4275725 - 4275562
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||    
T  4275725 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 4275626  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| ||||    
T  4275625 aggttatttttgtatttttagggggcctaaagagatattaggggggcctaaaaagcaatcttca 4275562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 2601423 - 2601585
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccg--------------ggtgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||              | ||| ||||||    
T  2601423 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccagatgtattataa 2601522  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||    
T  2601523 aggttatttttgtatttttaggaggcctaaagagatattg-gggggcctaaaaagcaatcttca 2601585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 2600991 - 2600835
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  2600991 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 2600892  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  2600891 ggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaat 2600835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 31229589 - 31229432
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  31229589 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 31229490  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  31229489 ggttatttttgtacttttagggggcctaaagagatattgggggggcctaaaaagcaat 31229432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 6858152 - 6858228
Alignment:
Q  178 ttaagtatggatcaagaatggacttctaccatattcttaaaggattcaaatcctttaacatttgaagtgtcactcct 254  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  6858152 ttaagtatggatcaagaatcaacttctaccatattcttaaaggactcaaatcctttaacatttgaagtctcactcct 6858228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 3341651 - 3341588
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3341651 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 3341588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 3358560 - 3358497
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3358560 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 3358497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 3342336 - 3342399
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  3342336 tataaaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaat 3342399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 3359245 - 3359308
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  3359245 tataaaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaat 3359308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 5233835 - 5233770
Alignment:
Q  92 gtgtgttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaag 157  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  5233835 gtgtgttgtgaaggttatttttgtatttttagagggcctaaaaagatattggaggggcctaaaaag 5233770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 11377361 - 11377287
Alignment:
Q  86 taccgggtgtgttataaaggttattttt-gtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||| ||| ||||||| ||||||||| |||||||||||||| | ||| |||||||  ||||||||||||||||||    
T  11377361 taccggatgtcttataaaagttattttttgtatttttagggggaccaaagagatatt--gggggcctaaaaagcaat 11377287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 5233928 - 5233886
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggt 59  Q
    ||||||| ||||||  |||||||||||||||||||||||||||    
T  5233928 tgaaaatgtgaaaatatgcctccggtatgtacataccgaaggt 5233886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 11377009 - 11376944
Alignment:
Q  97 ttataaaggttattttt-gtatttttag-ggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||| |||||||||| |||| | ||| |||||||| ||||||||||||||||||    
T  11377009 ttataaaggttattttttgtatttttaggggggaccaaagagatattg-gggggcctaaaaagcaat 11376944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 51539982 - 51539819
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||    
T  51539982 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 51539883  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  51539882 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 51539819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 4206366 - 4206204
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  4206366 gaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 4206267  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  4206266 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 4206204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 4206791 - 4206954
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactacc--------------gggtgtgttataa 102  Q
    |||||||||| |||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||              || ||| ||||||    
T  4206791 tgaaaatttgtaaatatgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactacctgtatgtaactaccggatgtattataa 4206890  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  4206891 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 4206954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 39232264 - 39232101
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||    
T  39232264 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 39232165  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||    
T  39232164 aggttatttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcttca 39232101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 51540414 - 51540571
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  51540414 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 51540513  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  51540514 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 51540571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 49604001 - 49604163
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg-gtgt------------gttataaa 103  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||             |||||||    
T  49604001 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtttataaa 49604100  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  49604101 ggttatttttgtatttttagggggcctaaagagatattgggggggcctgaaaagcaatcttca 49604163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 49603577 - 49603420
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  49603577 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 49603478  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  49603477 ggttatttttgtatttttagggggcttaaagagatattgggggggcctaaaaagcaat 49603420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 2519710 - 2519560
Alignment:
Q  24 ttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcacta--------------ccgggtgtgttataaaggttat 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||              |||| ||| |||||||||||||    
T  2519710 ttgaaaatgtgcctccggtatgtacataccgaaggtttaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaaggttat 2519611  T
Q  110 ttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||| |||||||||| |||||||| | ||||||||||||||||    
T  2519610 ttttgtatttttaaggggcctaaagagatattg-gagggcctaaaaagcaat 2519560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 39232695 - 39232851
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgc--------------actaccgggtgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||              |||||||| ||| |||||||    
T  39232695 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 39232794  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    | |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  39232795 gattatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaat 39232851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 46513595 - 46513736
Alignment:
Q  33 tgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaaggttatttttgtatt 118  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||               ||| |||||||| |||||||||||||    
T  46513595 tgcctccggtatgcacataccgaaggtttaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaagattatttttgtatt 46513694  T
Q  119 tttagggggcctaaaaagatattgagggggcctaaaaagcaa 160  Q
    ||||||||||||||| |||||||  |||||||||||||||||    
T  46513695 tttagggggcctaaagagatatttggggggcctaaaaagcaa 46513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 2520305 - 2520369
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2520305 ttataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 2520369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 29379788 - 29379725
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29379788 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 29379725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 29380472 - 29380536
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  29380472 ttataaaggttatttttgtatttttaggggacctaaagagatattgagggggcctaaaaagcaat 29380536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 25699353 - 25699307
Alignment:
Q  100 taaaggttatttttgtatttttagggggcctaaaaagatattgaggg 146  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  25699353 taaaggttattttcgtatttttagggggcctaaagagatattgaggg 25699307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 26355290 - 26355228
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||| |||| ||||||||| |||||||||||||| |||||||| || |||||||||||||||    
T  26355290 tataaaagttaattttgtattattagggggcctaaacagatattg-ggaggcctaaaaagcaat 26355228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 2528674 - 2528734
Alignment:
Q  101 aaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaata 162  Q
    ||||| |||||| | ||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  2528674 aaaggctattttcgaatttttaggggacctaaagagatatt-agggggcctaaaaagcaata 2528734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 42020446 - 42020403
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatat 140  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||    
T  42020446 ttataaagattattttcgtatttttagggggcctaaatagatat 42020403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 42020994 - 42021060
Alignment:
Q  97 ttataaaggttattttt-gtatttttagggg-gcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||| ||||||||| | | ||||||| ||||||||| |||| ||||||||||||    
T  42020994 ttataaaggttatttttcgtatttttaagagagcctaaagagatattgaaggggtctaaaaagcaat 42021060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 2528601 - 2528650
Alignment:
Q  42 tatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg 91  Q
    ||||||||| | |||||||| |||| |||||||||||||||||| |||||    
T  2528601 tatgtacatccggaaggttttaaatgtgaaaatttaaaatgcaccaccgg 2528650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 14090778 - 14090723
Alignment:
Q  105 gttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||| |||||||| ||||||||||| |||||||| || | |||||||||||||    
T  14090778 gttattttcgtattttttgggggcctaaatagatattg-ggagacctaaaaagcaat 14090723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 33255881 - 33255723
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| ||||||    
T  33255881 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 33255782  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  33255781 aggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 33255723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 47942171 - 47942009
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcac--------------taccgggtgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||              |||||| ||| ||||||    
T  47942171 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcacatccggtatgtaactaccggatgtattataa 47942072  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  47942071 aggttatttttgtatttttagggggcctaaagagatattg-gggggcctaaaaagcaatcttca 47942009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 47942595 - 47942757
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               | | |||||||    
T  47942595 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatatattataaa 47942694  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  47942695 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 47942757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 47948025 - 47948187
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||               | | |||||||    
T  47948025 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatatattataaa 47948124  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  47948125 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 47948187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 33256313 - 33256469
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgc--------------actaccgggtgtgttataaa 103  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||              |||||||| ||| |||||||    
T  33256313 gaaaatttgtaaatgtgcctctggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 33256412  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  33256413 ggttatttttgtacttttagggggcctaaagagatattg-gggggcctaaaaagcaat 33256469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 7331178 - 7331114
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7331178 ttataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 7331114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 7331862 - 7331925
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7331862 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 7331925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 31724173 - 31724237
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  31724173 ttataaagattatttttgtatttttaaggggcctaaatagatattgagggggcctaaaaagcaat 31724237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 34151675 - 34151600
Alignment:
Q  86 taccgggtgtgttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||| ||| |||| ||||  |||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  34151675 taccggatgtattattaagggcatttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaat 34151600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 34175449 - 34175524
Alignment:
Q  86 taccgggtgtgttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||| ||| |||| ||||  |||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  34175449 taccggatgtattattaagggcatttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaat 34175524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 48843245 - 48843180
Alignment:
Q  97 ttataaaggttattttt-gtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||| | ||| ||||||||    
T  48843245 ttataaaggttatttttcgtatttttagggggcctaaagagatattgagggtggctataaagcaat 48843180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 22377356 - 22377412
Alignment:
Q  105 gttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||| |||||||||||||||||||||||| ||||| ||  |||||||||||||||||    
T  22377356 gttaattttgtatttttagggggcctaaagagatactggaggggcctaaaaagcaat 22377412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 7331774 - 7331841
Alignment:
Q  24 ttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg 91  Q
    ||||||| |||||| |||||||||||||||| ||||  |||||  ||||| |||||||| ||||||||    
T  7331774 ttgaaaatgtgccttcggtatgtacataccggaggtgcaaaatgagaaaaattaaaatgaactaccgg 7331841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 16959595 - 16959657
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||| ||||||||  ||||||||||| ||||||| |||||||  |||||| |||||||||||    
T  16959595 ttataaaagttattttcatatttttagggagcctaaagagatatt--gggggcgtaaaaagcaat 16959657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 34152618 - 34152683
Alignment:
Q  101 aaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||| || ||| ||| ||| ||||||||||| ||||||| | |||||||||||||||||| ||||    
T  34152618 aaaggctaatttagtaatttcagggggcctaagaagatatggtgggggcctaaaaagcaatgttca 34152683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 34174506 - 34174441
Alignment:
Q  101 aaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    ||||| || ||| ||| ||| ||||||||||| ||||||| | |||||||||||||||||| ||||    
T  34174506 aaaggctaatttagtaatttcagggggcctaagaagatatggtgggggcctaaaaagcaatgttca 34174441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 1388991 - 1389153
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  1388991 gaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 1389090  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  1389091 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttca 1389153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 22424626 - 22424783
Alignment:
Q  18 gaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccggg--------------tgtgttataaa 103  Q
    ||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||               ||| |||||||    
T  22424626 gaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataaa 22424725  T
Q  104 ggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  22424726 ggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 22424783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 22424194 - 22424031
Alignment:
Q  17 tgaaaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcacta--------------ccgggtgtgttataa 102  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||              |||| ||| ||||||    
T  22424194 tgaaaatttgtaaatgtgcctccggtatgtacataccgaaggtgtaaaatatgaaaatttaaaatgcactaccggtatgtaactaccggatgtattataa 22424095  T
Q  103 aggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattca 166  Q
    |||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||| ||||    
T  22424094 aggttatttttgtatttttaaggggcctaaagagatattgggggagcctaaaaagcaatcttca 22424031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 29982814 - 29982965
Alignment:
Q  24 ttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgc--------------actaccgggtgtgttataaaggttat 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||              |||||||| | | |||||||||||||    
T  29982814 ttgaaaatgtgcctccggtatgtacataccgaaggtttaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatatattataaaggttat 29982913  T
Q  110 ttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  29982914 ttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 29982965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 37645068 - 37645219
Alignment:
Q  24 ttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgc--------------actaccgggtgtgttataaaggttat 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||              |||||||| | | || ||||||||||    
T  37645068 ttgaaaatgtgcctccggtatgtacataccgaaggtttaaaatgtgaaaatttaaaatgcactaccggtatgtaactaccggatatattctaaaggttat 37645167  T
Q  110 ttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  37645168 ttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 37645219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 37644472 - 37644408
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37644472 ttataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 37644408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 21647666 - 21647603
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21647666 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaat 21647603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 29982218 - 29982154
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  29982218 ttataaaggttatttttgtatttttagggggcctaaagagatattgagagggcctaaaaagcaat 29982154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 21648351 - 21648414
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  21648351 tataaaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaat 21648414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 15321879 - 15321815
Alignment:
Q  98 tataaaggttatttttgt-atttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||    
T  15321879 tataaaggttatttttgttatttttagggggcctaaagagatattgagggggcttaaaaagcaat 15321815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 15167822 - 15167875
Alignment:
Q  108 atttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  15167822 atttttgtatctttagggggcctaaagagatattgagggggtctaaaaagcaat 15167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 25217010 - 25217069
Alignment:
Q  32 gtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg 91  Q
    ||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||    
T  25217010 gtgcccccggtatgtacataccgaaggttcaaaatgtgaaattttaaaatgcaccaccgg 25217069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 15322641 - 15322680
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaag 136  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  15322641 ttataaaggtcatttttgtatttttagggggcctaaaaag 15322680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 15322553 - 15322621
Alignment:
Q  23 tttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg 91  Q
    |||||||| |||||| |||||||||||||||| ||||  |||||  ||||| |||||||| ||||||||    
T  15322553 tttgaaaatgtgccttcggtatgtacataccggaggtgcaaaatgagaaaagttaaaatgaactaccgg 15322621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 18060 - 18122
Alignment:
Q  98 tataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaa 160  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18060 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaa 18122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 17376 - 17312
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  17376 ttataaaggttatttttatatttttagggggcctaaagaaatattgagggggcctaaaaagcaat 17312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 17972 - 18039
Alignment:
Q  24 ttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcactaccgg 91  Q
    ||||||| |||||| |||||||||||||||||||||  |||||  ||||| |||||||| ||||||||    
T  17972 ttgaaaatgtgccttcggtatgtacataccgaaggtgcaaaatgagaaaaattaaaatgaactaccgg 18039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 5144 - 5208
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaat 161  Q
    ||||||||| ||||||  |||||||| ||| |||||| ||||||||| |||||||||||||||||    
T  5144 ttataaaggatattttcctatttttatgggtcctaaagagatattgatggggcctaaaaagcaat 5208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 5030 - 5097
Alignment:
Q  20 aaatttgaaaacgtgcctccggtatgtacataccgaaggtttaaaatatgaaaatttaaaatgcacta 87  Q
    ||||||||||| |||||| |||||||||||||||| ||||  ||||| |||||| |||||||| ||||    
T  5030 aaatttgaaaatgtgccttcggtatgtacataccggaggtgcaaaatgtgaaaaattaaaatgaacta 5097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 4816 - 4749
Alignment:
Q  97 ttataaaggttatttttgtatttttagggggcctaaaaagatattgagggggcctaaaaagcaatattc 165  Q
    |||||||||||||||| ||||||| | | |||||||| |||||||  ||||| || |||||||||||||    
T  4816 ttataaaggttattttcgtattttaaagaggcctaaagagatatt-tggggggcttaaaagcaatattc 4749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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