View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784-Insertion-10 (Length: 318)
Name: NF0784-Insertion-10
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784-Insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 23170810 - 23170964
Alignment:
| Q |
7 |
agatgctccaagaaaattaaacaaattcttctatcttttttctatcttaattcttaagtttagcttgtaacgtacagcataattatactccggcattttt |
106 |
Q |
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| T |
23170810 |
agattctccaagaaaattaaacaaattcttctatcttttttctatcttaattcttaagttttggttgtaacgtacgacataattatactccggcattttt |
23170909 |
T |
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| Q |
107 |
ctatgtgctatacttttcctcttcgaaatttctttggtcaaatcaaacgatataa |
161 |
Q |
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| T |
23170910 |
ctatgtgctatacttttcctcttcgaaatttctttggtcaaatcaaacgatataa |
23170964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 23186700 - 23186816
Alignment:
| Q |
46 |
ttctatcttaattcttaagttta-gcttgtaacgtacagcataattatactccggcatttttctatgtgctatacttttcctcttcgaaatttctttggt |
144 |
Q |
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||||||||||| |||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
23186700 |
ttctatcttaactcttaagtttttgcatgtaatgtatgacataattatactccggcatttttctatgtgctatacttttcgtcttagaaatttctttggt |
23186799 |
T |
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| Q |
145 |
caaatcaaacgatataa |
161 |
Q |
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||||| ||||||||||| |
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| T |
23186800 |
caaataaaacgatataa |
23186816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 23171105 - 23171147
Alignment:
| Q |
276 |
agaactcaattaaataattttaacaaagagtgtgcggatatga |
318 |
Q |
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| T |
23171105 |
agaattcaattaaataattttaacaaggagtgtgcggatatga |
23171147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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