View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0784-Insertion-11 (Length: 292)
Name: NF0784-Insertion-11
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784-Insertion-11 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 40254947 - 40255231
Alignment:
| Q |
8 |
catccaaagcaacaactttcatgtgatttatctttgtctagcctccaatcaaataatgagaagaaaatttcctcaatgaattcatctaacacaagaatag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40254947 |
catccaaagcaacaactttcatgtgatttatctttgtctagcctccaatcaaataatgagaagaaaatttcctcaatgaattcatctaacacaagaatag |
40255046 |
T |
|
| Q |
108 |
ttgaatcatgcaacatggccttnnnnnnnnnnnnnnttcatcaaaacaaatttggaatagtaaatgcaaatattgatgatgttgcttcctctagcctttc |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40255047 |
ttgaatcatgcaacatggccttaaaaaagcaaaaaattcatcaaaacaaatttggaatagtaaatgcaaatattgatgatgttgcttcctctagcctttc |
40255146 |
T |
|
| Q |
208 |
acttcatagcatcaacaaggagaattatttatctaacaatatttatgataaggaaagtgttgttccaacttctttgagtttagca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40255147 |
acttcatagcatcaacaaggagaattatttatctaacaatatttatgataaggaaagtgttgttccaacttctttgagtttagca |
40255231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5250 times since January 2019
Visitors: 5755