View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784-Insertion-16 (Length: 183)
Name: NF0784-Insertion-16
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784-Insertion-16 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 5e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 5e-73
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 34604595 - 34604753
Alignment:
| Q |
8 |
gctacttcattctttatccaaattaaacatttatacaacaaaacaatagtaatagatattgccatttatttttaaaaatggagaggttcggaactctcta |
107 |
Q |
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| T |
34604595 |
gctacttcattctttatccaaattaaacatttatacaacaaaacaatagtaatagatatcaccatttattttaaaaaatggagaggttcagaactctcta |
34604694 |
T |
|
| Q |
108 |
gtcttatttatagtagattagtttatacatacagccaataaaaaactcatttacattgt |
166 |
Q |
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| T |
34604695 |
gtcttatttatagtagattagttcatacatacagccaataaaaaactcatttacattgt |
34604753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 14122782 - 14122842
Alignment:
| Q |
28 |
aattaaacatttatacaacaaaacaatagtaatagatattgccatttatttttaaaaatgga |
89 |
Q |
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| T |
14122782 |
aattaaacacttatacaacaaaattatagtaat-gatattgtcatttattttaagaaatgga |
14122842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 43119268 - 43119221
Alignment:
| Q |
45 |
acaaaacaatagtaatagatattgccatttatttttaaaaatggagag |
92 |
Q |
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| T |
43119268 |
acaaaactatagtaatgaatgttgccatttattttaaaaaatggagag |
43119221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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