View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784-Insertion-2 (Length: 882)
Name: NF0784-Insertion-2
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784-Insertion-2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 717; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 6 - 882
Target Start/End: Original strand, 33251291 - 33252179
Alignment:
| Q |
6 |
caaatagtgattccaaaagagagggttcttgctacggtggatggtggggtccattgtttgggaattggaaaatcagaaagattgggtgcgggtggtaaca |
105 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
33251291 |
caaatagtgattccaaaagagagggttcttgccacggtggatggtggggtccattgtttgggaatgggaagatcagaaagattgggtgcgggtggtaaca |
33251390 |
T |
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| Q |
106 |
ttattggcaacttccatcaacaaaatctatgggtagagtttgatcttgccaatcgtagagttggctttggtgaggctgattgtagcaaattggctaaata |
205 |
Q |
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| T |
33251391 |
ttattggcaacttccatcaacaaaatctatgggtagagtttgatcttgccaatcgtagagttggctttggtgaggctgattgtagcaaattggctaaata |
33251490 |
T |
|
| Q |
206 |
aagcatcaaaaggnnnnnnnnn----ttcttatagttgagatatcgcagcagcattcacgaattgataaccgttgaattcagaccagacaatgtattaaa |
301 |
Q |
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||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |
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| T |
33251491 |
aagcatcaaaaggaaaagaaaaaaaattcatatagttgagatatggcagcagcattcacgaattgataatcgttgaattcagaccagataatatattaaa |
33251590 |
T |
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| Q |
302 |
tatgcgactaaactgtctgatcttaattcaacggttaccagtgtcctaatcatgtgaatgcaggatattccgattatcccgtctataagaagtcttgata |
401 |
Q |
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| T |
33251591 |
tacgcgactaaactgtctgattttaattcaacgattaccagtgtcctaaccatatgaatgaagggtatcccgattatcccgtctataagaagtcttgata |
33251690 |
T |
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| Q |
402 |
tatct-tagaaggagatg---atgatagtatatatggatgctagcacatgtaactatcatgactaggcatgagtcgttttttaactttataggttccact |
497 |
Q |
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| T |
33251691 |
tatccctagaaggagatgatgatgatagtatatatggatgctagcacatgtaactatcatgactaggcatgagtcgttttttaactttataggttccact |
33251790 |
T |
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| Q |
498 |
accctataagaagtatattattacatcattactgtacagatgaaacacacaagcatgagtcgtgattgatcaacacaatgatgtttgtaatagcaaccac |
597 |
Q |
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| T |
33251791 |
accctataagaagtatattattacatcattactgtacagatgaaacatacaagcatgagtcgtgattgatcaacacaatgatgtttgtaatagcaaccac |
33251890 |
T |
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| Q |
598 |
aagagtgagtgtatgacaaagaaaagtaagaaacaagtcttccgtgttgtaggggtaaacgtcaatggttttggattgtgtcaagttgtggggttggtta |
697 |
Q |
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| T |
33251891 |
aagagtgagtgtgtgacaaagaaaagtaagaaacaagtcttccgtgttgtaggggtaaacgtcaatggttttggattgtgtcaagttgtggggttggtta |
33251990 |
T |
|
| Q |
698 |
cattcatgctatgctaaagaacgatgtgtcataggccatgatataatcatgtatatattaatctgaatgtgacttatgtatatatcatgttagaagatat |
797 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33251991 |
cattcatgctatgctaaagaacgatgcgtcaaaggccatgatataatcatgtatatattaatctgaatgtgacttatgtatatatcatgttagaagatat |
33252090 |
T |
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| Q |
798 |
gtcaatcatgatg--tatgtgtatggtttg--atattaagataagctttgaaatgatgatttactattatactaataatatgctcctcc |
882 |
Q |
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| T |
33252091 |
gtcaatcatgatgtatatgtgtatggtttgatatattaagataagctttgaaatgatgatttactattatactaataatatgctcctcc |
33252179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 33265392 - 33265593
Alignment:
| Q |
9 |
atagtgattccaaaagagagggttcttgctacggtggatggtggggtccattgtttgggaattggaaaatcagaaagattgggtgcgggtggtaacatta |
108 |
Q |
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||||||||||| |||||||| ||||| | |||||| ||||| ||||| ||||| |||||||||| ||||| ||||||||| || |||||||||| |
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| T |
33265392 |
atagtgattccgaaagagagagttctcattgaggtggacggtggagtccactgttttggaattggaagggcagaaggattgggtggagggggtaacatta |
33265491 |
T |
|
| Q |
109 |
ttggcaacttccatcaacaaaatctatgggtagagtttgatcttgccaatcgtagagttggctttggtgaggctgattgtagcaaattggctaaataaag |
208 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||| ||||| | ||||||||| || ||| |||| | |||||||||| |||||||| || |
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| T |
33265492 |
ttggcaacttctatcaacaaaatttatgggtagagtttgatctggccaaacatagagttggtttccgtggggctaactgtagcaaatcagctaaatatag |
33265591 |
T |
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| Q |
209 |
ca |
210 |
Q |
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|| |
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| T |
33265592 |
ca |
33265593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 435 - 517
Target Start/End: Original strand, 33265839 - 33265922
Alignment:
| Q |
435 |
atgctagcacatgtaactatcatgactaggcatgagtcgttttt-taactttataggttccactaccctataagaagtatatta |
517 |
Q |
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||||| || ||||||| |||||||| ||||||||| | |||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
33265839 |
atgctggcgcatgtaaatatcatgagtaggcatgaatagtttttctaactttataggttccactaccttataagaagtatatta |
33265922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 29396030 - 29396210
Alignment:
| Q |
12 |
gtgattccaaaagagagggttcttgctacggtggatggtggggtccattgtttgggaattggaaaatcagaaagattgggtgcgggtggtaacattattg |
111 |
Q |
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||||||||||| || || || |||||| |||| |||||||||||| ||| | || ||||||| ||||| | ||| ||||| | |||| ||||||| |
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| T |
29396030 |
gtgattccaaaggaaagagtacttgctgacgtgggtggtggggtccactgtgttgggattggaagttcagataaattaggtgctgcaagtaatattattg |
29396129 |
T |
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| Q |
112 |
gcaacttccatcaacaaaatctatgggtagagtttgatcttgccaatcgtagagttggctttggtgaggctgattgtagca |
192 |
Q |
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| T |
29396130 |
gaaactttcatcaacaaaatctatgggtggaatttgatcttgtgaggcgtagggtggggtttggtaaggctgattgtagca |
29396210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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