View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784-Insertion-20 (Length: 112)

Name: NF0784-Insertion-20
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784-Insertion-20
NF0784-Insertion-20
[»] chr5 (2 HSPs)
chr5 (7-112)||(34815617-34815722)
chr5 (34-103)||(35865842-35865911)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 4e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 34815722 - 34815617
Alignment:
Q  7 atttaaggcattaatggcttatataaaagtatttggggtctgatcaacaaaactgaaaactatgaaaatccttgcagactgtttctgctttcctgtctta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34815722 atttaaggcattaatggcttatataaaagtatttggggtctgatcaacaaaactgaaaactatgaaaatccttgcagactgtttctgctttcctgtctta 34815623  T
Q  107 ttgttt 112  Q
    | ||||    
T  34815622 tggttt 34815617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 35865911 - 35865842
Alignment:
Q  34 agtatttggggtctgatcaacaaaactgaaaactatgaaaatccttgcagactgtttctgctttcctgtc 103  Q
    ||||||||||| |||||||  |||||||| |||| ||||| |||||||| ||||||| ||||||||||||    
T  35865911 agtatttggggcctgatcattaaaactgagaactgtgaaagtccttgcaaactgtttatgctttcctgtc 35865842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5618 times since January 2019
Visitors: 5758