View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784-Insertion-3 (Length: 412)

Name: NF0784-Insertion-3
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784-Insertion-3
NF0784-Insertion-3
[»] chr3 (5 HSPs)
chr3 (8-412)||(8264890-8265280)
chr3 (8-131)||(3258797-3258920)
chr3 (21-193)||(3286211-3286393)
chr3 (208-259)||(43767286-43767337)
chr3 (197-263)||(23512791-23512857)
[»] chr1 (3 HSPs)
chr1 (197-263)||(48375426-48375492)
chr1 (197-261)||(23527238-23527302)
chr1 (197-242)||(9682250-9682295)
[»] chr8 (6 HSPs)
chr8 (197-257)||(36178448-36178508)
chr8 (197-263)||(11766538-11766604)
chr8 (213-259)||(34462034-34462080)
chr8 (197-263)||(32203074-32203140)
chr8 (214-263)||(35631849-35631898)
chr8 (197-289)||(5948617-5948707)
[»] chr4 (5 HSPs)
chr4 (201-260)||(48178724-48178783)
chr4 (214-263)||(29524761-29524810)
chr4 (8-116)||(30501084-30501192)
chr4 (215-263)||(39102066-39102114)
chr4 (197-261)||(43921145-43921209)
[»] chr6 (1 HSPs)
chr6 (206-260)||(1364345-1364399)
[»] chr2 (3 HSPs)
chr2 (197-263)||(17897861-17897927)
chr2 (208-263)||(8701037-8701092)
chr2 (197-263)||(40083452-40083518)
[»] scaffold0954 (1 HSPs)
scaffold0954 (197-237)||(53-93)
[»] chr7 (4 HSPs)
chr7 (197-237)||(5082905-5082945)
chr7 (197-237)||(23223307-23223347)
chr7 (197-237)||(23237387-23237427)
chr7 (197-237)||(30833447-30833487)
[»] chr5 (1 HSPs)
chr5 (206-242)||(37706546-37706582)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 8264890 - 8265280
Alignment:
Q  8 tgtaaaaggtttccatttgaatgcacacatgtatcccatgacgaggacaacttctcaacatatctttaaacctttcccatccttcaaagactgt--ttct 105  Q
    |||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  8264890 tgtaaaaggttttcatttgaatgcatacacgtatcccatgatgaggacaccttctcaacagatctttaaacctttcccatccttcaaagactgtgtttct 8264989  T
Q  106 tcatttgtttgcctgaaagagtttatctcattcctcttttgagcaccggaggaaaatgtttgactaagaacttctcatcaagttctcttcatttgttgtc 205  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8264990 tcatttgtttgcctgaaagagtttatctcattcctctttcgagcattggaggaaaatgtttgactaagaacttctcatcaagttctctttatttgttgtc 8265089  T
Q  206 tcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaacaacgtccttagagcacatgttaacatttttcttgaaattatgct 305  Q
                    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  8265090 ----------------acaatttttaagataagattttcattttaaatttcttaacaacgtccttagagcacttgttaacatttttcttaaaattatgct 8265173  T
Q  306 tgttgcataagaacaggtacaacttcaactacttaaataattcatatcaagagcccagaggtggttctaaaatttccaattaattatttgctttagtttg 405  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8265174 tgttacataagaacaggtacaacttcaactacttaaataattcatatcaagagcccagaggtggttctaagatttccaattaattatttgctttagtttg 8265273  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 3258920 - 3258797
Alignment:
Q  8 tgtaaaaggtttccatttgaatgcacacatgtatcccatgacgaggacaacttctcaacatatctttaaacctttcccatccttcaaagactgtttcttc 107  Q
    |||| |||||||||||||||||  ||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  3258920 tgtagaaggtttccatttgaattaacacatgtatcccatgatgaggacaccttctcaacatatatttaaacctttcacattcttcaaagagtgtttcttc 3258821  T
Q  108 atttgtttgcctgaaagagtttat 131  Q
    |||||||| ||| |||||| ||||    
T  3258820 atttgttttcctcaaagaggttat 3258797  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 3286393 - 3286211
Alignment:
Q  21 catttgaatgcacacatgtatcccatgacgaggacaacttctcaacatatctttaaacctttcccatccttcaaagactgtttcttcatttgtttgcctg 120  Q
    |||||||||  ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||| |||     
T  3286393 catttgaattaacacatgtatcccatgatgaggacaccttctcaacatatatttaaacctttcccatgattcaaagagtgtttcttcatttgttttcctc 3286294  T
Q  121 aaagag---tttatctcattcctcttttgagc-------accggaggaaaatgtttgactaagaacttctcatcaagttctct 193  Q
    ||||||    |||| |||||||||||| ||||       || |||||||||| |||||| |||||||| ||| ||||||||||    
T  3286293 aaagaggttattatgtcattcctctttcgagcattaaagacaggaggaaaatatttgaccaagaacttatcaacaagttctct 3286211  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 43767337 - 43767286
Alignment:
Q  208 aatgtattgaatgcacaattttcaagataagattttcattttaaacttctta 259  Q
    ||||| |||||||||||| |||||||| || ||||||||||||||| |||||    
T  43767337 aatgtgttgaatgcacaaatttcaagacaaaattttcattttaaacctctta 43767286  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 23512791 - 23512857
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    |||||||| ||||||| ||||||||||||||  |||||||| ||||| | |||||| |||| |||||    
T  23512791 tttgttgtttcaatgtcttgaatgcacaattcccaagataaaatttttactttaaatttctaaacaa 23512857  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 48375492 - 48375426
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    |||||||| ||||| | ||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  48375492 tttgttgtttcaatttgttgaatgcacaatttccaatataaggttttcattttaaacttcttaacaa 48375426  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 23527302 - 23527238
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaac 261  Q
    |||||| | ||||| ||||||||| |||||||||||||||| |||| |||||||||||| |||||    
T  23527302 tttgttatttcaatatattgaatgtacaattttcaagataaaatttccattttaaactttttaac 23527238  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 9682295 - 9682250
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattt 242  Q
    |||||||| | ||||| |||||||||||||||||||||||| ||||    
T  9682295 tttgttgttttaatgtgttgaatgcacaattttcaagataaaattt 9682250  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 36178508 - 36178448
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttct 257  Q
    |||||||| ||||||| |||||||||||||||| ||||||| ||||||| |||||||||||    
T  36178508 tttgttgtttcaatgtcttgaatgcacaatttttaagataaaattttcactttaaacttct 36178448  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 11766538 - 11766604
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    |||||||| ||||||| |||||||||||||||||||| ||| |||| || ||||||||||| |||||    
T  11766538 tttgttgtttcaatgtcttgaatgcacaattttcaaggtaaaatttccactttaaacttctaaacaa 11766604  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 34462034 - 34462080
Alignment:
Q  213 attgaatgcacaattttcaagataagattttcattttaaacttctta 259  Q
    ||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  34462034 attgaatacacaattctcaagataaaattttcattttaaacttctta 34462080  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 32203074 - 32203140
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    |||||||| |||||||||| |||||||||||| |||| |||  ||| ||||||||||  ||||||||    
T  32203074 tttgttgtttcaatgtattcaatgcacaatttccaaggtaaagtttccattttaaacgccttaacaa 32203140  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 35631849 - 35631898
Alignment:
Q  214 ttgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    ||||||||||||||| ||| ||||  ||||||||||||| ||||||||||    
T  35631849 ttgaatgcacaatttccaatataaagttttcattttaaatttcttaacaa 35631898  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 5948707 - 5948617
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaacaacgtccttagagcacatgttaacattt 289  Q
    |||||||| ||||||| ||||||  |||||||| || ||||  |||||  |||||||||||||| || ||||||||||||| ||||| |||||    
T  5948707 tttgttgt-tcaatgtgttgaatatacaatttttaaaataaagttttcgatttaaacttcttaagaa-gtccttagagcacttgttagcattt 5948617  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 48178783 - 48178724
Alignment:
Q  201 ttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaa 260  Q
    |||| ||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  48178783 ttgtttcaatgtgttgaatgcacaatttttaagataaaatttttattttaaacttcttaa 48178724  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 29524761 - 29524810
Alignment:
Q  214 ttgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  29524761 ttgaatgtacaatttttaagataaaattttcattttaaacttcttaacaa 29524810  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 30501192 - 30501084
Alignment:
Q  8 tgtaaaaggtttccatttgaatgcacacatgtatcccatgacgaggacaacttctcaacatatctttaaacctttcccatccttcaaagactgtttcttc 107  Q
    |||||||||||| |||| |||| ||| || ||||||||||| ||   || |||||||| |  |||||||||||||| ||  ||||||| |  ||||||||    
T  30501192 tgtaaaaggttttcattcgaatacactcaggtatcccatgatgattgcaccttctcaataattctttaaacctttctcaagcttcaaaaagagtttcttc 30501093  T
Q  108 atttgtttg 116  Q
     ||||||||    
T  30501092 gtttgtttg 30501084  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 39102066 - 39102114
Alignment:
Q  215 tgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    ||||||||||||||  || ||||  ||||||||||||||||||||||||    
T  39102066 tgaatgcacaatttctaaaataatgttttcattttaaacttcttaacaa 39102114  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 43921145 - 43921209
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaac 261  Q
    |||||| | ||||||| ||||||||||||||| |||| |||  ||  ||||||||||||||||||    
T  43921145 tttgttctttcaatgtgttgaatgcacaatttccaaggtaaagttcccattttaaacttcttaac 43921209  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 1364345 - 1364399
Alignment:
Q  206 tcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaa 260  Q
    ||||||||||||||| |||||||  |||||||  |||||||||||||||||||||    
T  1364345 tcaatgtattgaatgtacaatttctaagataaagttttcattttaaacttcttaa 1364399  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 17897861 - 17897927
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    |||||||| | ||| | |||||||||||||||| ||||||| |||| |||||||||||| |||||||    
T  17897861 tttgttgttttaatatgttgaatgcacaatttttaagataaaatttgcattttaaactttttaacaa 17897927  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 8701092 - 8701037
Alignment:
Q  208 aatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    ||||| |||||| || |||||| ||||||| ||||| |||||||||||||||||||    
T  8701092 aatgtgttgaatacataatttttaagataaaatttttattttaaacttcttaacaa 8701037  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 40083518 - 40083452
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataagattttcattttaaacttcttaacaa 263  Q
    |||||||| |||||||||||||| ||||||||  ||||||| | ||| | ||||||||||| |||||    
T  40083518 tttgttgtttcaatgtattgaatacacaatttctaagataaaacttttactttaaacttctaaacaa 40083452  T

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Target: scaffold0954 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 93 - 53
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataa 237  Q
    |||||||| ||||||| |||||||||||||||| |||||||    
T  93 tttgttgtttcaatgtgttgaatgcacaatttttaagataa 53  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 5082945 - 5082905
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataa 237  Q
    |||||||| ||||||| ||||||||| ||||||||||||||    
T  5082945 tttgttgtttcaatgttttgaatgcataattttcaagataa 5082905  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 23223347 - 23223307
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataa 237  Q
    |||||||| ||||||| |||||||||||||||| |||||||    
T  23223347 tttgttgtttcaatgtgttgaatgcacaatttttaagataa 23223307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 23237427 - 23237387
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataa 237  Q
    |||||||| ||||||| |||||||||||||||| |||||||    
T  23237427 tttgttgtttcaatgtgttgaatgcacaatttttaagataa 23237387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 30833487 - 30833447
Alignment:
Q  197 tttgttgtctcaatgtattgaatgcacaattttcaagataa 237  Q
    |||||| | ||||||| ||||||||||||||||||||||||    
T  30833487 tttgttatttcaatgtgttgaatgcacaattttcaagataa 30833447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 37706582 - 37706546
Alignment:
Q  206 tcaatgtattgaatgcacaattttcaagataagattt 242  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  37706582 tcaatgtaatgaatgcacaatttttaagataagattt 37706546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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