View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784-Insertion-5 (Length: 403)
Name: NF0784-Insertion-5
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 49709511 - 49709188
Alignment:
| Q |
8 |
caacattggtgcattatttccgtctccttttaaatgtgagcaccctttttgcatttttaattactacgatgatatcatctcatagaaattgacatatctg |
107 |
Q |
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| T |
49709511 |
caacattggtgcattatttccgtctccttttaaatgtgagcaccctttttgcatttttaattactacgatgatatcatctcatagaaattgacatatctg |
49709412 |
T |
|
| Q |
108 |
tgtctctcatctttgactggtcctcattttcctagatttaaaacacatttgtttgattcccaatatttcctatattttataattttaatttaatatacat |
207 |
Q |
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| T |
49709411 |
tgtctctcatctttgactggtcctcattttcctagatttaaaacacatttgtttgattcccaatatttcctatattttataattttaatttaatatacat |
49709312 |
T |
|
| Q |
208 |
gtagaataaataaattttcaccgttttcttttgttgtatatacacattagaaatcaaatgcaatttgaagatcacatgcatccaactgttttaaagtgtc |
307 |
Q |
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| T |
49709311 |
gtagaataaataaattttcaccgttttcttttgttgtatatacacattagaaatcaaatgcaatttgaagatcacatgcatccaactgttttaaagtgtc |
49709212 |
T |
|
| Q |
308 |
aatcttgtctttttatgattatta |
331 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
49709211 |
aatcttgtctttttatgattatta |
49709188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 49709163 - 49709119
Alignment:
| Q |
359 |
ctgtcaattctccatcaaacgcgttttcattcattatttcattag |
403 |
Q |
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| T |
49709163 |
ctgtcaattctccatcaaacgcgttttcattcattatttcattag |
49709119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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