View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784-Insertion-6 (Length: 397)
Name: NF0784-Insertion-6
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 10791535 - 10791153
Alignment:
| Q |
10 |
tgattcatgaactttgttttaattacatcagannnnnnnaaccaatttatgtttttgaaatttctaattagcctgtcaccctacaaagagaaagctttct |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10791535 |
tgattcatgaactttgttttaattacatcagatttttttaaccaattt--gtttttgaaatttctaattagcctgtcaccctacaaagagaaagctttct |
10791438 |
T |
|
| Q |
110 |
ttctctgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgaagtggattttccgatgtttgtgtgctttagactttaggt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10791437 |
ttctctgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgtagtggattttccgatgtttgtgtgctttagactttaggt |
10791338 |
T |
|
| Q |
210 |
taattactgtgaaaaattgaaaggagaactannnnnnnnnnnnnnnggtacaagaaaactatctttttatttgaatgtgaaatgaaatttataatgaaaa |
309 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10791337 |
taattactgtgaaaaattgaaaggagaacta---ttttttttttttggtacaagagaactacctttttatttgaatgtgaaatgaaatttataatgaaaa |
10791241 |
T |
|
| Q |
310 |
gttggtcgagaaaatactgaatcaatacattaaactgttcatttgtctatttgtctaaatgttaacaagcttctcacttcagctccca |
397 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10791240 |
gttggtcgagaaaattctgaatcaatacattaaactgttcatttgtctatttgtctaaatgttaacaagcttctcacttcagctccca |
10791153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 394
Target Start/End: Original strand, 25874551 - 25874931
Alignment:
| Q |
10 |
tgattcatgaactttgttttaattacatcagannnnnnnaaccaatttatgtttttgaaatttctaattagcctgtcaccctacaaagagaaagctttct |
109 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25874551 |
tgattcatgaactttgttttaattacatcatatttttttaaccaatttttgtttttgaaatttctaattagcccgtcaccctacaaagagaaagctttct |
25874650 |
T |
|
| Q |
110 |
ttctctgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgaagtggattttccgatgtttgtgtgctttagactttaggt |
209 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25874651 |
ttctcagtttgtattttattaacctaaaattgagctctatagttgtttggaatctgattgtagtggattttccgatgtttgtgtgctttagactttaggt |
25874750 |
T |
|
| Q |
210 |
taattactgtgaaaaattgaaaggagaactannnnnnnnnnnnnnnggtacaagaaaactatctttttatttgaatgtgaaatgaaatttataatgaaaa |
309 |
Q |
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|||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25874751 |
taattactatgaaaaattgaaaggaaaacta----ttatttttttgggtacaagagaactatctttttatttgaatgtgaaatgaaatttataatgaaaa |
25874846 |
T |
|
| Q |
310 |
gttggtcgagaaaatactgaatcaatacattaaactgttcatttgtctatttgtctaaatgttaacaagcttctcacttcagctc |
394 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25874847 |
gttgatcgagaaaatactgaatcaatacattaaactgttcatttgtctatttgtctaaatgttaacaagcttatcacttcagctc |
25874931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 25873285 - 25873513
Alignment:
| Q |
10 |
tgattcatgaactttgttttaattacatcagannnnnnnaaccaatttatgtttttgaaatttctaattagcctgtcaccctacaaagagaaagctttct |
109 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25873285 |
tgattcatgaactttgttttaattacatcat-tttttttaaccaatttatgtttttgaaatttctaattagcctgtcaccctacaaagagaaagctttct |
25873383 |
T |
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| Q |
110 |
ttctctgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgaagtggattttccgatgtttgtgtgctttagactttaggt |
209 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
25873384 |
ttctcagtttgtattttattaaccaaaaattgagcgctatagttgtttggaatctgattgtagtggatttttcgatgtttgtgtgctttagactttaggt |
25873483 |
T |
|
| Q |
210 |
taattactgtgaaaaattgaaaggagaact |
239 |
Q |
| |
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||||||| |||||||||||||||| |||| |
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| T |
25873484 |
taattacgatgaaaaattgaaaggaaaact |
25873513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 4010903 - 4011087
Alignment:
| Q |
10 |
tgattcatgaactttgttttaattacatcagannnnnnnaaccaatttatgtttttgaaatttctaattagcctgtcaccctacaaagagaaagctttct |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4010903 |
tgattcatgaactttgttttaattacatcagatttcttgaacca-tttatgtttttgaaatttctaattagcccgtcaccctacaaagagaaagctttct |
4011001 |
T |
|
| Q |
110 |
ttctctgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgaagtggattttccgatgtttgtgtgc |
195 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
4011002 |
ttctgtgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgtactggattttccgatgtttgtgtgc |
4011087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 256 - 397
Target Start/End: Original strand, 4011111 - 4011244
Alignment:
| Q |
256 |
ggtacaagaaaactatctttttatttgaatgtgaaatgaaatttataatgaaaagttggtcgagaaaatactgaatcaatacattaaactgttcatttgt |
355 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4011111 |
ggtacaagagaactatctttttagttgaatgtgaaatgaaatttataatgaaaagttggtcgagaaaataatgaatcaatacattaaactgttc------ |
4011204 |
T |
|
| Q |
356 |
ctatttgtctaaatgttaacaagcttctcacttcagctccca |
397 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
4011205 |
--atttgtttaaatgttaacaagcttctcacttcagctccca |
4011244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 2273570 - 2273754
Alignment:
| Q |
10 |
tgattcatgaactttgttttaattacatcagannnnnnnaaccaatttatgtttttgaaatttctaattagcctgtcaccctacaaagagaaagctttct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2273570 |
tgattcatgaactttgttttaattacatcagatttcttgaacca-tttatgtttttgaaatttctaattagcccgtcaccctacaaagagaaagctttct |
2273668 |
T |
|
| Q |
110 |
ttctctgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgaagtggattttccgatgtttgtgtgc |
195 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2273669 |
ttctgtgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgtagtggattttccgatgtttgtgtgc |
2273754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 256 - 397
Target Start/End: Original strand, 2273777 - 2273910
Alignment:
| Q |
256 |
ggtacaagaaaactatctttttatttgaatgtgaaatgaaatttataatgaaaagttggtcgagaaaatactgaatcaatacattaaactgttcatttgt |
355 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2273777 |
ggtacaagagaactatctttttagttgaatgtgaaatgaaatttataatgaaaagttggtcgagaaaataatgaatcaatacattaaactgttc------ |
2273870 |
T |
|
| Q |
356 |
ctatttgtctaaatgttaacaagcttctcacttcagctccca |
397 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
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| T |
2273871 |
--atttgtttaaatgttaacaagcttctcacttcagctccca |
2273910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 39345060 - 39345244
Alignment:
| Q |
10 |
tgattcatgaactttgttttaattacatcagannnnnnnaaccaatttatgtttttgaaatttctaattagcctgtcaccctacaaagagaaagctttct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39345060 |
tgattcatgaactttgttttaattacatcagatttcttgaacca-tttatgtttttgaaatttctaattagcccgtcaccctacaaagagaaagctttct |
39345158 |
T |
|
| Q |
110 |
ttctctgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgaagtggattttccgatgtttgtgtgc |
195 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
39345159 |
ttctgtgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgtagtggattttccgatgtttgtgtgc |
39345244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 256 - 397
Target Start/End: Original strand, 39345267 - 39345400
Alignment:
| Q |
256 |
ggtacaagaaaactatctttttatttgaatgtgaaatgaaatttataatgaaaagttggtcgagaaaatactgaatcaatacattaaactgttcatttgt |
355 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
39345267 |
ggtacaagagaactatctttttagttgaatgtgaaatgaaatttataatgaaaagttggtcgagaaaataatgaatcaatacattaaactgttc------ |
39345360 |
T |
|
| Q |
356 |
ctatttgtctaaatgttaacaagcttctcacttcagctccca |
397 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39345361 |
--atttgtttaaatgttaacaagcttctcacttcagctccca |
39345400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 35346512 - 35346696
Alignment:
| Q |
10 |
tgattcatgaactttgttttaattacatcagannnnnnnaaccaatttatgtttttgaaatttctaattagcctgtcaccctacaaagagaaagctttct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35346512 |
tgattcatgaactttgttttaattacatcagatttcttgaacca-tttatgtttttgaaatttctaattagcccgtcaccctacaaagagaaagctttct |
35346610 |
T |
|
| Q |
110 |
ttctctgtttgtattttattaaccaaaaattgagctctatagttgtttggaatctgattgaagtggattttccgatgtttgtgtgc |
195 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
35346611 |
ttctgtgtttgtattttattaatcaaaaattgagctctatagttgtttggaatctgattgtagtggattttccgatgtttgtgtgc |
35346696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 256 - 397
Target Start/End: Original strand, 35346719 - 35346852
Alignment:
| Q |
256 |
ggtacaagaaaactatctttttatttgaatgtgaaatgaaatttataatgaaaagttggtcgagaaaatactgaatcaatacattaaactgttcatttgt |
355 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
35346719 |
ggtacaagagaactatctttttagttgaatgtgaaatgaaatttataatgaaaagttggtcgagaaaataatgaatcaatacattaaactgttc------ |
35346812 |
T |
|
| Q |
356 |
ctatttgtctaaatgttaacaagcttctcacttcagctccca |
397 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35346813 |
--atttgtttaaatgttaacaagcttctcacttcagctccca |
35346852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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