View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784-Insertion-9 (Length: 335)

Name: NF0784-Insertion-9
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784-Insertion-9
NF0784-Insertion-9
[»] chr1 (11 HSPs)
chr1 (10-335)||(9229837-9230163)
chr1 (8-198)||(9170867-9171057)
chr1 (8-304)||(9118114-9118411)
chr1 (100-198)||(9178941-9179039)
chr1 (8-299)||(9218950-9219242)
chr1 (100-269)||(9156221-9156391)
chr1 (101-198)||(1816309-1816406)
chr1 (8-195)||(9200434-9200621)
chr1 (100-198)||(9162133-9162231)
chr1 (8-147)||(1868284-1868423)
chr1 (101-197)||(1856639-1856735)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 9229837 - 9230163
Alignment:
Q  10 aacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgtaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9229837 aacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgtaa 9229936  T
Q  110 accgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagcagttcctgatg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9229937 accgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagtagttcctgatg 9230036  T
Q  210 cg-cttctcttttagaaagttggcgtagcaaaatgaaaccgccattttgtttaaagaatttctcttttagtttcaagagttttcttctttgatataacat 308  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9230037 cgtcttctcttttagaaagttggcgtagcaaaatgaaaccgccattttgtttaaagaatttctcttttagtttcaagagttttcttctttgatataacat 9230136  T
Q  309 gtacaacgatgaactagccacagatag 335  Q
    ||||||||| |||||||||||||||||    
T  9230137 gtacaacgaggaactagccacagatag 9230163  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 9170867 - 9171057
Alignment:
Q  8 agaacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgt 107  Q
    |||||||| |||||||| ||||||||||| | |||  | || || ||||||||||| || || |  || || ||  ||||||| | || || ||||||||    
T  9170867 agaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacgattttgttgtcaggtaaaactcctttgt 9170966  T
Q  108 aaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagc 198  Q
    |||| ||||| ||||||||||||||||| ||||| || || || ||||| ||||| |||||||||||||| |||||| |||| ||||||||    
T  9170967 aaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatatttgagc 9171057  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 9118411 - 9118114
Alignment:
Q  8 agaacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgt 107  Q
    |||| ||| |||||||| ||||||||||| | |||  | || || |||||| ||||||| ||||  || || || ||||| || | || || |||||||     
T  9118411 agaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttttgacagccacgattctgttatcgggtaaaactcctttga 9118312  T
Q  108 aaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagcagttcctga 207  Q
    |||  ||||||||||||||||| ||||| ||||| || || || ||| ||||||||||||| |||||||| | |||| |||| || ||||| | |   ||    
T  9118311 aaattgtaccgaaacctcctcttccaatgattaagctttcgtcgtagctgttggtagcttttttaagttccttttctgtgaatatctgagctgattgaga 9118212  T
Q  208 tgcg-cttctcttttagaaagttggcgtagcaaaatgaaaccgccattttgtttaaagaatttctcttttagtttcaagagttttcttctttgatata 304  Q
     | | |||||||| || | ||||   |||||||||||||||| |||||||||| ||||||||| | ||||||||| | |||||||||| |||| ||||    
T  9118211 cgtgtcttctcttgtaaagagtttttgtagcaaaatgaaaccaccattttgttgaaagaatttttgttttagtttgatgagttttcttttttggtata 9118114  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 9178941 - 9179039
Alignment:
Q  100 tcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagc 198  Q
    |||||||||||| ||||| ||||||||||||||||| ||||| || || || ||||| ||||| |||||||||||||| |||||| |||| ||||||||    
T  9178941 tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatatttgagc 9179039  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 9218950 - 9219242
Alignment:
Q  8 agaacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgt 107  Q
    |||||||| |||||||| ||||||||||| |  ||  | || || |||||||||||||| ||||  || |||||  |||| || |  | ||||||||||     
T  9218950 agaacaactacctcattaatgaattgctcgatctgatttgcgtctattattttggactttttgacagcgacaattttgttatcgggcaaaattcctttga 9219049  T
Q  108 aaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagcagttcctga 207  Q
    |||| ||||| ||||||||||| || || ||||| || || || ||||| ||||| |||||||||||||| |||||  |||| |||||||| | |   ||    
T  9219050 aaactgtaccaaaacctcctctaccgatgattaagctttcgtcgtagtttttggtggctttcttaagttcctcttccgtgaatatttgagctgattgcga 9219149  T
Q  208 tgcg-cttctcttttagaaagttggcgtagcaaaatgaaaccgccattttgtttaaagaatttctcttttagtttcaagagttttcttctttg 299  Q
     | | |||||||| | || |||||  ||||||||||  |||| |||||||||| ||||||||| |  |||||||| | |||||| ||| ||||    
T  9219150 agtgtcttctcttgttgatagttgttgtagcaaaatagaaccaccattttgttgaaagaatttttgctttagtttgatgagtttccttttttg 9219242  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 269
Target Start/End: Original strand, 9156221 - 9156391
Alignment:
Q  100 tcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagca 199  Q
    ||||||| |||| ||||| ||||||||||||||||| |||||  | || || ||||| ||||| |||||||||||||| |||||  |||| |||| |||     
T  9156221 tcctttgaaaactgtaccaaaacctcctctgccaatgattaagttttcatcgtagtttttggtggctttcttaagttcctcttcagtgaatatttcagct 9156320  T
Q  200 gttcctgatgcg-cttctcttttagaaagttggcgtagcaaaatgaaaccgccattttgtttaaagaattt 269  Q
    | |   || | | |||||||| |||| |||||  ||||||||||| |||| |||||||||| |||||||||    
T  9156321 gattgcgaggtgtcttctcttgtagatagttgttgtagcaaaatggaaccaccattttgttgaaagaattt 9156391  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 1816309 - 1816406
Alignment:
Q  101 cctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagc 198  Q
    |||||| |||| ||||| ||||||||||| || || ||||| ||||| ||| ||||||| ||||||||| | ||||||| |||||||||||| |||||    
T  1816309 cctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaaaatgtgagc 1816406  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 9200434 - 9200621
Alignment:
Q  8 agaacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgt 107  Q
    |||||||| |||||||| ||||||||||| | |||  | || || ||||||||||| || || |  || |||||  |||| || | || || ||||||||    
T  9200434 agaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttgt 9200533  T
Q  108 aaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttg 195  Q
    |||| ||||| ||||||||||| || || ||||| || || || || || ||||| |||||||||||||| |||||| |||| |||||    
T  9200534 aaactgtaccaaaacctcctctaccgatgattaagctttcgtcgtattttttggtggctttcttaagttcctcttctgtgaatatttg 9200621  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 9162133 - 9162231
Alignment:
Q  100 tcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagc 198  Q
    ||||||| |||| ||||| |||||||||||||| || ||||| || || || ||||| ||||| |||||||| ||||| |||||| |||| ||||||||    
T  9162133 tcctttgaaaactgtaccaaaacctcctctgccgatgattaagctatcatcgtagtttttggtggctttctttagttcctcttctgtgaatatttgagc 9162231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 1868423 - 1868284
Alignment:
Q  8 agaacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgt 107  Q
    ||||||||||||||||| |||||||| || | |||| |   ||| |||||||| || || ||||| ||||| || || || ||  |||||| |||||||     
T  1868423 agaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcctttga 1868324  T
Q  108 aaaccgtaccgaaacctcctctgccaattattaaactctc 147  Q
    |||| ||||| ||||| ||| ||||||| |||||| ||||    
T  1868323 aaacggtaccaaaaccacctttgccaatgattaaattctc 1868284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 1856735 - 1856639
Alignment:
Q  101 cctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgag 197  Q
    ||||||||||| ||||| ||||||||| | || || ||||| ||||| ||| | ||||| || |||||| | ||||||| ||||| |||||| ||||    
T  1856735 cctttgtaaactgtaccaaaacctcctttacctatgattaagctctcatcaaatttgttagtggctttccttagttcattttcttcgaaaatgtgag 1856639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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