View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_high_1 (Length: 960)

Name: NF0784_high_1
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_high_1
NF0784_high_1
[»] chr1 (15 HSPs)
chr1 (694-842)||(788312-788469)
chr1 (714-842)||(2655638-2655774)
chr1 (712-842)||(11238272-11238413)
chr1 (710-839)||(36319999-36320138)
chr1 (712-842)||(1674796-1674935)
chr1 (771-842)||(31623138-31623209)
chr1 (712-775)||(52414834-52414897)
chr1 (771-839)||(13254789-13254857)
chr1 (794-841)||(21535845-21535892)
chr1 (710-823)||(39386613-39386737)
chr1 (712-839)||(6295777-6295916)
chr1 (782-842)||(10430549-10430609)
chr1 (771-834)||(23698754-23698817)
chr1 (776-842)||(43021128-43021194)
chr1 (45-88)||(41967495-41967538)
[»] chr7 (17 HSPs)
chr7 (712-842)||(4962963-4963104)
chr7 (713-822)||(14771456-14771576)
chr7 (713-822)||(15221908-15222028)
chr7 (773-835)||(25290611-25290673)
chr7 (714-842)||(15643257-15643395)
chr7 (718-842)||(39430628-39430763)
chr7 (712-835)||(35793144-35793278)
chr7 (706-837)||(37124087-37124229)
chr7 (712-775)||(38707227-38707289)
chr7 (710-835)||(10535042-10535178)
chr7 (782-842)||(28226548-28226608)
chr7 (712-760)||(39617456-39617504)
chr7 (771-835)||(39617533-39617597)
chr7 (771-842)||(2798595-2798665)
chr7 (712-775)||(3835769-3835831)
chr7 (771-842)||(24394252-24394323)
chr7 (777-842)||(2273539-2273604)
[»] chr6 (13 HSPs)
chr6 (712-842)||(21527352-21527493)
chr6 (712-842)||(7972660-7972798)
chr6 (732-842)||(9095797-9095918)
chr6 (713-835)||(8049101-8049234)
chr6 (712-839)||(25056410-25056549)
chr6 (771-835)||(2437870-2437934)
chr6 (773-842)||(4665871-4665940)
chr6 (773-842)||(4184682-4184751)
chr6 (776-839)||(14093817-14093880)
chr6 (712-771)||(26252727-26252786)
chr6 (777-835)||(4122778-4122836)
chr6 (714-760)||(14094280-14094326)
chr6 (46-87)||(2325144-2325185)
[»] chr2 (31 HSPs)
chr2 (712-842)||(27746388-27746529)
chr2 (712-842)||(4959409-4959550)
chr2 (771-842)||(42756781-42756852)
chr2 (712-842)||(150307-150446)
chr2 (712-839)||(38589332-38589470)
chr2 (770-842)||(32113382-32113454)
chr2 (712-775)||(11074061-11074124)
chr2 (712-825)||(25965918-25966042)
chr2 (714-775)||(34424882-34424943)
chr2 (773-842)||(36244064-36244133)
chr2 (775-842)||(4316692-4316759)
chr2 (771-842)||(15507441-15507511)
chr2 (771-842)||(41541035-41541106)
chr2 (771-842)||(44898101-44898172)
chr2 (776-842)||(4700989-4701055)
chr2 (714-771)||(1397377-1397434)
chr2 (710-775)||(16806657-16806721)
chr2 (710-775)||(16845938-16846002)
chr2 (712-839)||(21252500-21252639)
chr2 (782-842)||(20171467-20171527)
chr2 (714-760)||(5783567-5783613)
chr2 (714-760)||(29408896-29408942)
chr2 (773-842)||(33659550-33659619)
chr2 (782-835)||(45273450-45273503)
chr2 (774-842)||(11083896-11083964)
chr2 (771-835)||(13140924-13140987)
chr2 (732-771)||(20891412-20891451)
chr2 (771-834)||(33659693-33659756)
chr2 (776-842)||(1770207-1770273)
chr2 (710-771)||(3309947-3310008)
chr2 (777-842)||(42872281-42872345)
[»] chr8 (19 HSPs)
chr8 (710-837)||(32233547-32233685)
chr8 (717-842)||(9455159-9455296)
chr8 (771-842)||(7578230-7578301)
chr8 (712-775)||(3443830-3443893)
chr8 (771-839)||(25496640-25496708)
chr8 (771-839)||(27231764-27231832)
chr8 (718-842)||(2742960-2743079)
chr8 (717-775)||(3741536-3741594)
chr8 (771-839)||(1530620-1530688)
chr8 (771-839)||(25400461-25400529)
chr8 (712-775)||(16393641-16393704)
chr8 (712-775)||(29315997-29316060)
chr8 (710-835)||(34146102-34146238)
chr8 (793-835)||(43026719-43026761)
chr8 (774-842)||(14896623-14896691)
chr8 (771-842)||(4418561-4418631)
chr8 (771-842)||(16599400-16599471)
chr8 (771-835)||(39628319-39628384)
chr8 (771-835)||(39637869-39637934)
[»] chr5 (21 HSPs)
chr5 (712-842)||(16365652-16365793)
chr5 (717-822)||(17557882-17557998)
chr5 (712-842)||(32718007-32718148)
chr5 (706-842)||(14654858-14654989)
chr5 (712-775)||(36060294-36060357)
chr5 (777-839)||(12436761-12436823)
chr5 (771-839)||(17201217-17201285)
chr5 (777-839)||(39940336-39940399)
chr5 (713-775)||(18413455-18413517)
chr5 (718-760)||(28619914-28619956)
chr5 (43-87)||(5978359-5978403)
chr5 (712-839)||(11992246-11992384)
chr5 (771-835)||(17202860-17202924)
chr5 (786-842)||(19924893-19924949)
chr5 (712-775)||(249671-249734)
chr5 (712-775)||(36437446-36437509)
chr5 (712-775)||(43346785-43346848)
chr5 (776-842)||(19931832-19931898)
chr5 (771-829)||(28619980-28620038)
chr5 (776-842)||(39614828-39614894)
chr5 (714-771)||(37269371-37269428)
[»] chr4 (26 HSPs)
chr4 (718-842)||(38434262-38434397)
chr4 (714-842)||(45635479-45635615)
chr4 (771-842)||(37371432-37371502)
chr4 (710-839)||(6949011-6949150)
chr4 (712-839)||(38045332-38045471)
chr4 (713-773)||(46195668-46195728)
chr4 (717-835)||(24074145-24074274)
chr4 (712-839)||(9089644-9089782)
chr4 (771-842)||(24538331-24538402)
chr4 (712-775)||(33889497-33889560)
chr4 (712-774)||(49262933-49262995)
chr4 (773-839)||(50720892-50720958)
chr4 (713-775)||(54982859-54982921)
chr4 (723-775)||(19443674-19443726)
chr4 (771-839)||(37210014-37210082)
chr4 (712-775)||(17330749-17330812)
chr4 (712-775)||(45666220-45666283)
chr4 (712-774)||(53392571-53392632)
chr4 (712-775)||(668158-668221)
chr4 (771-838)||(20782459-20782526)
chr4 (771-825)||(21342253-21342307)
chr4 (784-842)||(25490466-25490524)
chr4 (46-87)||(12765106-12765147)
chr4 (771-839)||(23529505-23529574)
chr4 (47-88)||(30969941-30969982)
chr4 (772-840)||(46196822-46196891)
[»] scaffold1130 (1 HSPs)
scaffold1130 (712-842)||(306-447)
[»] chr3 (25 HSPs)
chr3 (712-842)||(25841959-25842100)
chr3 (771-842)||(1272415-1272486)
chr3 (773-839)||(27264104-27264170)
chr3 (712-842)||(7259730-7259855)
chr3 (712-839)||(45646519-45646657)
chr3 (712-842)||(21959708-21959848)
chr3 (712-839)||(45759981-45760119)
chr3 (772-842)||(19234016-19234086)
chr3 (710-839)||(34668599-34668739)
chr3 (772-842)||(375736-375806)
chr3 (777-839)||(1405222-1405284)
chr3 (712-839)||(20841240-20841376)
chr3 (771-839)||(2093765-2093833)
chr3 (771-835)||(5493542-5493606)
chr3 (782-842)||(23272054-23272114)
chr3 (771-842)||(9588734-9588805)
chr3 (712-775)||(16237675-16237738)
chr3 (712-775)||(21934612-21934675)
chr3 (712-839)||(37030995-37031132)
chr3 (770-842)||(19578320-19578392)
chr3 (723-775)||(45667402-45667454)
chr3 (712-775)||(38751199-38751262)
chr3 (773-834)||(2440684-2440744)
chr3 (782-835)||(20141042-20141095)
chr3 (794-839)||(45667468-45667513)
[»] scaffold0012 (1 HSPs)
scaffold0012 (712-775)||(202243-202306)
[»] scaffold0006 (1 HSPs)
scaffold0006 (794-842)||(46602-46650)
[»] scaffold0188 (1 HSPs)
scaffold0188 (772-842)||(6417-6487)
[»] scaffold0118 (1 HSPs)
scaffold0118 (771-842)||(14910-14980)
[»] scaffold0159 (1 HSPs)
scaffold0159 (714-760)||(37030-37076)
[»] scaffold0005 (2 HSPs)
scaffold0005 (732-835)||(256685-256799)
scaffold0005 (714-771)||(272484-272541)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 8e-36; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 694 - 842
Target Start/End: Complemental strand, 788469 - 788312
Alignment:
Q  694 ttactccctccgttcattcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat---------gatttatca 784  Q
    ||||| ||| ||||| ||||||| |||| |||||||| ||||| | ||||||||||||||||||||||| ||||||||||||         |||||||||    
T  788469 ttacttccttcgttccttcgttcttttttaagtgtctttttagagagaatttttcgttcctatttaattatcgttttggtattttaagtatgatttatca 788370  T
Q  785 attataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  788369 attataccatttgtcaattattctaatatttttcaataaaactaattaatgttatata 788312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 714 - 842
Target Start/End: Original strand, 2655638 - 2655774
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtcaat 802  Q
    |||||||| ||||||||   || ||||||||||||||||||||||||||| |||||||||||           ||||||||||||||||| |||||||||    
T  2655638 ttcctttttaagtgtct---taaggtgaatttttcgttcctatttaattgccgttttggtattttaagggtacgatttatcaattataccatttgtcaat 2655734  T
Q  803 tattctaatatttttcaataaaattaattaatgctatata 842  Q
    || ||| |||||||||||||||| ||||||||| ||||||    
T  2655735 tactcttatatttttcaataaaactaattaatgttatata 2655774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 11238413 - 11238272
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||           ||||| ||| ||||||| |||| ||    
T  11238413 cgttcttttttaagtgtctttttagggtgaatttttcgttcctatttaactgtggttttggtattttaagggtacgatttgtcagttataccctttggca 11238314  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| |||||||||||||||| ||||||||| ||||||    
T  11238313 attattcttatatttttcaataaaactaattaatgatatata 11238272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 710 - 839
Target Start/End: Complemental strand, 36320138 - 36319999
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat----------gatttatcaattataccttttgtc 799  Q
    |||||||||||| || ||||| ||||||||| ||||||||||| ||||||| |||| |||||||||          ||||| ||||||||||| ||||||    
T  36320138 ttcgttcctttttaaatgtctttttagggtgcatttttcgttcttatttaactgtctttttggtattttaaggtacgatttgtcaattataccatttgtc 36320039  T
Q  800 aattattctaatatttttcaataaaattaattaatgctat 839  Q
    ||||| ||| || ||||||||||||| |||||||||||||    
T  36320038 aattactcttatctttttcaataaaactaattaatgctat 36319999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 1674935 - 1674796
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||| ||||| |||||||| |||||| |||||||||||||||| ||||| ||||||||| ||||           ||||| |||||||||||||| ||||    
T  1674935 cgtttctttttaagtgtctttttaggatgaatttttcgttcct-tttaactgtcgttttagtattttaagggtacgatttgtcaattataccttt-gtca 1674838  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| |||||||||||||||| ||||||||| ||||||    
T  1674837 attattcttatatttttcaataaaactaattaatgttatata 1674796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 771 - 842
Target Start/End: Complemental strand, 31623209 - 31623138
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||| |||||||||||||||| ||| ||||||||||| ||||||||| |||||||||||||||| ||||||    
T  31623209 ggtataatttatcaattataccctttatcaattattcttatatttttccataaaattaattaatgttatata 31623138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 52414834 - 52414897
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||| || ||||||||||||| |||||||||||| ||||||||||||||    
T  52414834 cgttcctttttaagtgtcttttaagggtgaattttttgttcctatttaactgtcgttttggtat 52414897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 771 - 839
Target Start/End: Complemental strand, 13254857 - 13254789
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||| ||||| ||||||||||||||| ||||||| ||| || ||||||||||||| |||||||||||||    
T  13254857 ggtacgatttgtcaattataccttttatcaattactcttatctttttcaataaaactaattaatgctat 13254789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 794 - 841
Target Start/End: Complemental strand, 21535892 - 21535845
Alignment:
Q  794 tttgtcaattattctaatatttttcaataaaattaattaatgctatat 841  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  21535892 tttgtcaattattcttatatttttcaataaaactaattaatgctatat 21535845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 710 - 823
Target Start/End: Original strand, 39386613 - 39386737
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgtttt-----------ggtatgatttatcaattataccttttgt 798  Q
    |||||||||||| |||||||| |||||| ||| |||||| ||||||||||| |||| ||||           |||||||||| ||||||||||| |||||    
T  39386613 ttcgttcctttttaagtgtctttttaggatgagtttttctttcctatttaagtgtctttttagtattttaagggtatgatttttcaattataccctttgt 39386712  T
Q  799 caattattctaatatttttcaataa 823  Q
    |||||| ||| || |||||||||||    
T  39386713 caattactcttatctttttcaataa 39386737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 712 - 839
Target Start/End: Complemental strand, 6295916 - 6295777
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaat-ttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtc 799  Q
    |||||||||| |||||||| |||||||||||| ||||||||| ||||||| |||| |||||||||           ||||||| ||||||||| ||||||    
T  6295916 cgttcctttttaagtgtctttttagggtgaattttttcgttcttatttaactgtctttttggtattttaagggtgcgatttattaattataccctttgtc 6295817  T
Q  800 aattattctaatatttttcaataaaattaattaatgctat 839  Q
    | ||| | | || ||||| ||||||| |||||||||||||    
T  6295816 acttacttttatctttttaaataaaactaattaatgctat 6295777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 842
Target Start/End: Complemental strand, 10430609 - 10430549
Alignment:
Q  782 tcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||| ||||||||||| ||| || ||||| ||||||| ||||||||||||||||    
T  10430609 tcaattataccatttgtcaattactcttatcttttttaataaaactaattaatgctatata 10430549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 771 - 834
Target Start/End: Original strand, 23698754 - 23698817
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaat 834  Q
    |||||||||| ||||||||| | ||||||||||| ||| |||||||| ||||||| ||||||||    
T  23698754 ggtatgatttgtcaattatatcctttgtcaattactcttatatttttaaataaaactaattaat 23698817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 776 - 842
Target Start/End: Original strand, 43021128 - 43021194
Alignment:
Q  776 gatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||| ||||||||||| |||| |||||| ||| |||||| ||||||||| ||||||||| ||||||    
T  43021128 gatttgtcaattataccatttgccaattactcttatatttatcaataaaactaattaatgttatata 43021194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 41967538 - 41967495
Alignment:
Q  45 cgtttgtttcaagtttacaaaatataattctaggaataattttc 88  Q
    ||||||||||||||||||||||||||||  | ||||||||||||    
T  41967538 cgtttgtttcaagtttacaaaatataatattgggaataattttc 41967495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 4963104 - 4962963
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||  |||||||||||||||| |||||||||||| ||||||||||||||           |||||||||||||||||||||||||    
T  4963104 cgttcctttttaagtgtcgttttagggtgaattttttgttcctatttaactgtcgttttggtattttaagggtatgatttatcaattataccttttgtca 4963005  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| |||||||||||||||| |||||| |||||||||    
T  4963004 attattcttatatttttcaataaaactaattagtgctatata 4962963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 713 - 822
Target Start/End: Complemental strand, 14771576 - 14771456
Alignment:
Q  713 gttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg-----------gtatgatttatcaattataccttttgtcaa 801  Q
    |||| |||| |||||| | ||||||||||||||||||||||||||||| ||||||||||           ||||||||| ||||||||||| ||||||||    
T  14771576 gttcttttttaagtgtttttttagggtgaatttttcgttcctatttaactgtcgttttggtattttaagggtatgatttgtcaattataccctttgtcaa 14771477  T
Q  802 ttattctaatatttttcaata 822  Q
    ||||||| |||||||||||||    
T  14771476 ttattcttatatttttcaata 14771456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 713 - 822
Target Start/End: Complemental strand, 15222028 - 15221908
Alignment:
Q  713 gttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg-----------gtatgatttatcaattataccttttgtcaa 801  Q
    |||| |||| |||||| | ||||||||||||||||||||||||||||| ||||||||||           ||||||||| ||||||||||| ||||||||    
T  15222028 gttcttttttaagtgtttttttagggtgaatttttcgttcctatttaactgtcgttttggtattttaagggtatgatttgtcaattataccctttgtcaa 15221929  T
Q  802 ttattctaatatttttcaata 822  Q
    ||||||| |||||||||||||    
T  15221928 ttattcttatatttttcaata 15221908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 773 - 835
Target Start/End: Original strand, 25290611 - 25290673
Alignment:
Q  773 tatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  25290611 tatgatttatcaattatatcttttgtcaattattcttatatttttcaataaaactaattaatg 25290673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 714 - 842
Target Start/End: Original strand, 15643257 - 15643395
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtcaat 802  Q
    |||||||| |||||| | |||||| ||||||||||||| |||||||| ||||||||||||||           ||||| ||||||||||| ||| |||||    
T  15643257 ttcctttt-aagtgtttttttaggatgaatttttcgtttctatttaactgtcgttttggtattttaagggtacgatttctcaattataccctttatcaat 15643355  T
Q  803 tattctaatatttttcaataaaattaattaatgctatata 842  Q
    || ||| || ||||||||||||| ||||||||||||||||    
T  15643356 tactcttatttttttcaataaaactaattaatgctatata 15643395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 718 - 842
Target Start/End: Complemental strand, 39430763 - 39430628
Alignment:
Q  718 ttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtcaattatt 806  Q
    |||| |||||||  |||| |||||||||||||||||||||||| |||| |||||||||           |||||  |||||||||  |||||||||||||    
T  39430763 tttttaagtgtcgttttaaggtgaatttttcgttcctatttaactgtcattttggtattttaagggtaagatttgacaattatactctttgtcaattatt 39430664  T
Q  807 ctaatatttttcaataaaattaattaatgctatata 842  Q
    || |||||||||||||||| |||||| |||||||||    
T  39430663 cttatatttttcaataaaactaattagtgctatata 39430628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 712 - 835
Target Start/End: Complemental strand, 35793278 - 35793144
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    ||||| |||| |||||||| |||||||||||||||| | |||||||||| |||| |||||||||           ||||| ||||||||||| |||||||    
T  35793278 cgttcttttttaagtgtctttttagggtgaatttttagctcctatttaactgtctttttggtattttaagggtgtgatttgtcaattataccctttgtca 35793179  T
Q  801 attattctaatatttttcaataaaattaattaatg 835  Q
    |||| ||| || ||||||||||||| |||||||||    
T  35793178 attactcttatctttttcaataaaactaattaatg 35793144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 706 - 837
Target Start/End: Original strand, 37124087 - 37124229
Alignment:
Q  706 ttcattcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattatacctt 794  Q
    ||||| |||||||||| |||||||| ||||| ||||||||||||||||| ||||| | || |||||||||            |||| ||||||||||| |    
T  37124087 ttcatccgttcctttttaagtgtctttttagtgtgaatttttcgttcctttttaactttctttttggtattttaagggtacaatttgtcaattataccct 37124186  T
Q  795 ttgtcaattattctaatatttttcaataaaattaattaatgct 837  Q
    |||| ||||| ||| || ||||||||||||| |||||||||||    
T  37124187 ttgtaaattactcttatctttttcaataaaactaattaatgct 37124229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 38707227 - 38707289
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||| | ||||||||||||    
T  38707227 cgttccttttcaactgttt-tttagggtgaatttttcgttcctatttaactatcgttttggtat 38707289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 710 - 835
Target Start/End: Complemental strand, 10535178 - 10535042
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtatg-----------atttatcaattataccttttgt 798  Q
    ||||||| |||| |||||||| | || ||||| |||||||||||||||||| |||| |||||||||            |||| |||||||||||||||||    
T  10535178 ttcgttcgtttttaagtgtctttatatggtgattttttcgttcctatttaactgtctttttggtattttaagaatacaatttgtcaattataccttttgt 10535079  T
Q  799 caattattctaatatttttcaataaaattaattaatg 835  Q
    |||||  ||| || ||||||||||||| |||||||||    
T  10535078 caattcctcttatctttttcaataaaactaattaatg 10535042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 842
Target Start/End: Original strand, 28226548 - 28226608
Alignment:
Q  782 tcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||||||||||||||  ||| || ||||||||||||| ||||||||| ||||||    
T  28226548 tcaattataccttttgtcaattgctcttatctttttcaataaaactaattaatgttatata 28226608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 760
Target Start/End: Original strand, 39617456 - 39617504
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaa 760  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  39617456 cgttcctttttaagtgtctttttagggtgaattttttgttcctatttaa 39617504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 835
Target Start/End: Original strand, 39617533 - 39617597
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    |||| ||||| ||| ||||||||||||||||||| | | || |||||||||||||||||||||||    
T  39617533 ggtacgatttgtcagttataccttttgtcaattacttttatctttttcaataaaattaattaatg 39617597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 771 - 842
Target Start/End: Original strand, 2798595 - 2798665
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||| || ||||||||| | |||||||| ||| || ||||||||||||| ||||||||||||||||    
T  2798595 ggtatgatttgtcgattatacctct-gtcaattactcttatctttttcaataaaactaattaatgctatata 2798665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 3835831 - 3835769
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||| |||||| |||||||| ||||||||||||| |||| |||||||||    
T  3835831 cgttcctttttaagtgtctttttaggttgaatttt-cgttcctatttaactgtctttttggtat 3835769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 771 - 842
Target Start/End: Complemental strand, 24394323 - 24394252
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||| ||||||||||||||||| |||||||| || ||| |||||||| ||||||| ||| ||||| ||||||    
T  24394323 ggtacgatttatcaattataccctttgtcaactactcttatatttttgaataaaactaactaatgatatata 24394252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 777 - 842
Target Start/End: Complemental strand, 2273604 - 2273539
Alignment:
Q  777 atttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||| ||||||||||  ||||||||||| ||| || ||||||||||||| | ||||||||||||||    
T  2273604 atttgtcaattatacgctttgtcaattactcttatctttttcaataaaacttattaatgctatata 2273539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 7e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 21527493 - 21527352
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg-----------gtatgatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||           ||||||||| ||||||| ||| |||||||    
T  21527493 cgttcctttttaagtgtctttttaggatgaatttttcgttcctatttaattgtcgttttggtattttaagggtatgatttgtcaattaaaccctttgtca 21527394  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  21527393 attattctaatatttttcattaaaactaattaatgctttata 21527352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 7972798 - 7972660
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg-----------gtatgatttatcaattataccttttgtca 800  Q
    |||||||||| ||||||||   ||||||||||||||||||||||||||| ||| ||||||           ||||||||||||||||||||  |||||||    
T  7972798 cgttcctttttaagtgtct---tagggtgaatttttcgttcctatttaaatgttgttttgatattttgagggtatgatttatcaattatacactttgtca 7972702  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  7972701 attattctaatatttttcaataaaactaattaatgttatata 7972660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 732 - 842
Target Start/End: Complemental strand, 9095918 - 9095797
Alignment:
Q  732 tttagggtgaatttttcgttcctatttaattgtcgtttt-----------ggtatgatttatcaattataccttttgtcaattattctaatatttttcaa 820  Q
    ||||||||||||||||||||| ||||||| |||||||||           |||||||||| ||||||||||| ||||||||||||||| |||||||||||    
T  9095918 tttagggtgaatttttcgttcttatttaactgtcgttttagtattttaagggtatgatttgtcaattataccatttgtcaattattcttatatttttcaa 9095819  T
Q  821 taaaattaattaatgctatata 842  Q
    ||||| ||||||||||||||||    
T  9095818 taaaactaattaatgctatata 9095797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 713 - 835
Target Start/End: Original strand, 8049101 - 8049234
Alignment:
Q  713 gttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgtttt-----------ggtatgatttatcaattataccttttgtcaa 801  Q
    ||||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||           ||||||||||||||||| |||| ||||||||    
T  8049101 gttcctttttaagtgtctttttagggtgaatttttcgttcttatttaattgtctttttgatattttaaaggtatgatttatcaattttaccctttgtcaa 8049200  T
Q  802 ttattctaatatttttcaataaaattaattaatg 835  Q
    ||| ||| || ||||||||||||| |||||||||    
T  8049201 ttactcttatctttttcaataaaactaattaatg 8049234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 712 - 839
Target Start/End: Original strand, 25056410 - 25056549
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgtttt------------ggtatgatttatcaattataccttttgtc 799  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||  ||| ||||            |||||||||| ||||| ||||  ||||||    
T  25056410 cgttcctttttaagtgtctttttagggtgaatttttcgttcctatttaaaagtctttttctgtattttaagggtatgatttgtcaatcatactctttgtc 25056509  T
Q  800 aattattctaatatttttcaataaaattaattaatgctat 839  Q
    ||||| ||| || ||||||||||||| |||||||||||||    
T  25056510 aattactcttatctttttcaataaaactaattaatgctat 25056549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 771 - 835
Target Start/End: Complemental strand, 2437934 - 2437870
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    |||||||||| ||||||||||| ||||||||||||||| || ||||||||||||| |||||||||    
T  2437934 ggtatgatttgtcaattataccctttgtcaattattcttatttttttcaataaaactaattaatg 2437870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 773 - 842
Target Start/End: Original strand, 4665871 - 4665940
Alignment:
Q  773 tatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| ||||||||||| ||| ||||||| ||| |||||||| ||||||| ||||||||||||||||    
T  4665871 tatgatttgtcaattataccatttatcaattactcttatatttttaaataaaactaattaatgctatata 4665940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 773 - 842
Target Start/End: Original strand, 4184682 - 4184751
Alignment:
Q  773 tatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| |||||||| |  ||| ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  4184682 tatgatttgtcaattattctatttatcaattactcttatatttttaaataaaattaattaatgctatata 4184751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 776 - 839
Target Start/End: Complemental strand, 14093880 - 14093817
Alignment:
Q  776 gatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    ||||| ||||||||||  ||||||||||| ||| || ||||||||||||| |||||||||||||    
T  14093880 gatttgtcaattatactctttgtcaattactcttatctttttcaataaaactaattaatgctat 14093817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 771
Target Start/End: Complemental strand, 26252786 - 26252727
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg 771  Q
    |||| ||||| |||||||  | |||||||||||||| |||||||||||| ||||||||||    
T  26252786 cgttactttttaagtgtcgttctagggtgaattttttgttcctatttaactgtcgttttg 26252727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 777 - 835
Target Start/End: Original strand, 4122778 - 4122836
Alignment:
Q  777 atttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    |||| ||| ||||||| ||| ||||||| ||| || |||||||||||||||||||||||    
T  4122778 atttgtcacttataccatttctcaattactcttatctttttcaataaaattaattaatg 4122836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 714 - 760
Target Start/End: Complemental strand, 14094326 - 14094280
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaa 760  Q
    |||||||| ||| || | |||||||||||||||||||||||||||||    
T  14094326 ttcctttttaagagtttttttagggtgaatttttcgttcctatttaa 14094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 2325185 - 2325144
Alignment:
Q  46 gtttgtttcaagtttacaaaatataattctaggaataatttt 87  Q
    |||||||||||||||||||||||||||| | || ||||||||    
T  2325185 gtttgtttcaagtttacaaaatataattttggggataatttt 2325144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 712 - 842
Target Start/End: Original strand, 27746388 - 27746529
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgtttt-----------ggtatgatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||           |||||||||| |||||||||||||||||      
T  27746388 cgttcctttttaagtgtctttttagggtgaatttttcgttcctatttaactgtcgttttggtattttaagggtatgatttgtcaattataccttttgttt 27746487  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||| | | |||||||||||||||| ||||||||||||||||    
T  27746488 attacttttatatttttcaataaaactaattaatgctatata 27746529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 4959550 - 4959409
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||| ||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||||||           ||||| ||||||||||| |||||||    
T  4959550 cgtttctttttaagtgtctttttagggtaaatttttcgttcctatttaactatcgttttggtattttaagggtatgatttgtcaattataccgtttgtca 4959451  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    || ||||| ||| |||| ||||||||||||||||||||||||    
T  4959450 atcattcttatagtttttaataaaattaattaatgctatata 4959409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 771 - 842
Target Start/End: Original strand, 42756781 - 42756852
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  42756781 ggtatgatttgtcaattatatcttttgtcaattattcttatatttttcaataaaactaattaatgctatata 42756852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 150446 - 150307
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||           ||||  ||||||||||| |||||||    
T  150446 cgttcctttttaagtgtctttttagggtgaatttttcgttcctatttaactgtctttttggtattttaagggtacgattcgtcaattataccctttgtca 150347  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||| |||  ||||||||||||||| ||||||||| ||||||    
T  150346 attactct--tatttttcaataaaactaattaatgttatata 150307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 712 - 839
Target Start/End: Complemental strand, 38589470 - 38589332
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||||||||| |||||| | |||| |||||||||||||||||||||||| || | |||||||||           ||||||||||||||||| |||||||    
T  38589470 cgttcctttttaagtgtttttttatggtgaatttttcgttcctatttaactgccattttggtattttaaaggtacgatttatcaattataccatttgtca 38589371  T
Q  801 attattctaatatttttcaataaaattaattaatgctat 839  Q
    |||| | | || |||||||||||||| ||||||||||||    
T  38589370 attacttttatctttttcaataaaatcaattaatgctat 38589332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 770 - 842
Target Start/End: Complemental strand, 32113454 - 32113382
Alignment:
Q  770 tggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||| ||||||||| | ||| ||||||||||| |||||||||||||||| ||||||||| ||||||    
T  32113454 tggtatgatttgtcaattatatcctttatcaattattcttatatttttcaataaaactaattaatgttatata 32113382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 11074124 - 11074061
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||| | |||||||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  11074124 cgttccttcttaagtgtctttttagggtgaatttttcgttcctatttaactgtctttttggtat 11074061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 712 - 825
Target Start/End: Complemental strand, 25966042 - 25965918
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||||||||| || ||||| ||||||||||||||||| ||||||||||| | ||||||||||||           ||||| |||| |||||| |||||||    
T  25966042 cgttcctttttaaatgtctttttagggtgaatttttcattcctatttaactatcgttttggtattttaagggtacgatttgtcaactataccctttgtca 25965943  T
Q  801 attattctaatatttttcaataaaa 825  Q
    |||| ||| ||||||||||||||||    
T  25965942 attactcttatatttttcaataaaa 25965918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 714 - 775
Target Start/End: Complemental strand, 34424943 - 34424882
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||    
T  34424943 ttcctttttaagtgtctttttagggtgaatttttcgttcatatttaaatgtcgtttttgtat 34424882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 773 - 842
Target Start/End: Complemental strand, 36244133 - 36244064
Alignment:
Q  773 tatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| ||||||||||| ||||||||||| ||| |||||||| ||||||| ||||||||| ||||||    
T  36244133 tatgatttgtcaattataccctttgtcaattactcttatattttttaataaaactaattaatgttatata 36244064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 775 - 842
Target Start/End: Original strand, 4316692 - 4316759
Alignment:
Q  775 tgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||| ||||||||| ||||||||||||| ||| || ||||||||||||| ||||||||| ||||||    
T  4316692 tgatttgtcaattatatcttttgtcaattactcttatctttttcaataaaactaattaatgttatata 4316759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 771 - 842
Target Start/End: Original strand, 15507441 - 15507511
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||| ||||||||||| ||||||||||| ||| || ||||||||| ||| ||||||||||||||||    
T  15507441 ggtatgatttgtcaattataccctttgtcaattactcttatctttttcaat-aaactaattaatgctatata 15507511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 771 - 842
Target Start/End: Original strand, 41541035 - 41541106
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||| |||||| ||||||| ||||||||| ||| ||| || ||||||||||||| ||||||||||||||||    
T  41541035 ggtataatttataaattatatcttttgtcatttactcttatctttttcaataaaactaattaatgctatata 41541106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 771 - 842
Target Start/End: Original strand, 44898101 - 44898172
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||| ||||| ||||||||||| ||||||||||| ||| || ||||||||||||| ||||||||| ||||||    
T  44898101 ggtacgatttttcaattataccctttgtcaattactcttatctttttcaataaaactaattaatgttatata 44898172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 776 - 842
Target Start/End: Complemental strand, 4701055 - 4700989
Alignment:
Q  776 gatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||||||||  ||||||||||| ||| ||  ||||||||||||||||||||| |||||||    
T  4701055 gatttatcaattatactatttgtcaattactcttatcgttttcaataaaattaattaatactatata 4700989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 714 - 771
Target Start/End: Original strand, 1397377 - 1397434
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg 771  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||| |||| |||||    
T  1397377 ttcctttttaagtgtctttttaggatgaatttttcgttcctatttaactgtctttttg 1397434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 710 - 775
Target Start/End: Complemental strand, 16806721 - 16806657
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||||| |||||| | ||||||||||||||||||||| ||||||| |||| |||||||||    
T  16806721 ttcgttcctttttaagtgtatttttagggtgaatttttcgttcttatttaactgtc-ttttggtat 16806657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 710 - 775
Target Start/End: Complemental strand, 16846002 - 16845938
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||||| |||||| | ||||||||||||||||||||| ||||||| |||| |||||||||    
T  16846002 ttcgttcctttttaagtgtatttttagggtgaatttttcgttcttatttaactgtc-ttttggtat 16845938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 712 - 839
Target Start/End: Original strand, 21252500 - 21252639
Alignment:
Q  712 cgttccttttcaagtgtctattt-agggtgaatttttcgttcctatttaattgtcgtttt-----------ggtatgatttatcaattataccttttgtc 799  Q
    |||||| ||| |||||||| ||| |||||||||||||||||  |||||||||||| ||||           |||| ||||| ||||||||||  ||||||    
T  21252500 cgttccgttttaagtgtcttttttagggtgaatttttcgtttatatttaattgtctttttaatattttaagggtacgatttgtcaattatactctttgtc 21252599  T
Q  800 aattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||  || || |||||||||||||||||||||||||||    
T  21252600 aattacacttatctttttcaataaaattaattaatgctat 21252639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 842
Target Start/End: Complemental strand, 20171527 - 20171467
Alignment:
Q  782 tcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||| ||||||||||| ||| || ||||||||||||| ||||||||| ||||||    
T  20171527 tcaattataccctttgtcaattactcttatctttttcaataaaactaattaatgttatata 20171467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 714 - 760
Target Start/End: Complemental strand, 5783613 - 5783567
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaa 760  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||    
T  5783613 ttcctttttaagtgtctttttaggatgaatttttcgttcctatttaa 5783567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 714 - 760
Target Start/End: Complemental strand, 29408942 - 29408896
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaa 760  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  29408942 ttccttttcaagtgtctttttagggtgaattttccgtacctatttaa 29408896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 773 - 842
Target Start/End: Original strand, 33659550 - 33659619
Alignment:
Q  773 tatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| ||||||||||  ||| | ||||| ||| |||||||||||||||| ||||||||| ||||||    
T  33659550 tatgatttgtcaattatacaatttattaattactcttatatttttcaataaaactaattaatgttatata 33659619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 782 - 835
Target Start/End: Complemental strand, 45273503 - 45273450
Alignment:
Q  782 tcaattataccttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    ||||||||||| ||||||||||| ||| || ||||||||||||| |||||||||    
T  45273503 tcaattataccctttgtcaattactcttatctttttcaataaaactaattaatg 45273450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 774 - 842
Target Start/End: Original strand, 11083896 - 11083964
Alignment:
Q  774 atgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||| | ||||||||||||||||||||  ||| || ||||| ||||||| ||||||||| ||||||    
T  11083896 atgatttgttaattataccttttgtcaatttctctgatcttttttaataaaactaattaatgttatata 11083964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 835
Target Start/End: Complemental strand, 13140987 - 13140924
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    ||||| |||||||||||||||||||  ||||||| ||| |||||||||||||||| |||| ||||    
T  13140987 ggtataatttatcaattatacctttcttcaattactct-atatttttcaataaaactaataaatg 13140924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 732 - 771
Target Start/End: Complemental strand, 20891451 - 20891412
Alignment:
Q  732 tttagggtgaatttttcgttcctatttaattgtcgttttg 771  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  20891451 tttatggtgaatttttcgttcctatttaactgtcgttttg 20891412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 834
Target Start/End: Original strand, 33659693 - 33659756
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaat 834  Q
    ||||| |||| ||||||||| | ||||||||||| ||| || ||||||||||||| ||||||||    
T  33659693 ggtataatttgtcaattatatcatttgtcaattactcttatctttttcaataaaactaattaat 33659756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 842
Target Start/End: Complemental strand, 1770273 - 1770207
Alignment:
Q  776 gatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||||||| | ||||||||| | ||| |  ||||||||||||| ||||||||| ||||||    
T  1770273 gatttatcaattatatcatttgtcaatcactcttaattttttcaataaaactaattaatgttatata 1770207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 771
Target Start/End: Complemental strand, 3310008 - 3309947
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg 771  Q
    |||||||||||| ||| |||| ||||  |||||||||||||| |||||||| |||| |||||    
T  3310008 ttcgttcctttttaagcgtctctttatagtgaatttttcgtttctatttaactgtctttttg 3309947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 842
Target Start/End: Complemental strand, 42872345 - 42872281
Alignment:
Q  777 atttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||| ||||||||||||||||||||||| ||| || ||||| ||| ||| ||||||||| ||||||    
T  42872345 atttgtcaattataccttttgtcaattactcttattttttttaat-aaactaattaatgttatata 42872281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 710 - 837
Target Start/End: Original strand, 32233547 - 32233685
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggta-----------tgatttatcaattataccttttgt 798  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||           |||||| ||||||||||| |||||    
T  32233547 ttcgttcctttttaagtgtctttttagggtgaatttttcgttcctatttaactgtctttttggtattttaagggtgtgatttgtcaattataccctttgt 32233646  T
Q  799 caattattctaatatttttcaataaaattaattaatgct 837  Q
    |||||| ||| || ||||||||||||| |||||||||||    
T  32233647 caattactcttatctttttcaataaaactaattaatgct 32233685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 717 - 842
Target Start/End: Original strand, 9455159 - 9455296
Alignment:
Q  717 cttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttat-caattataccttttgtcaatta 804  Q
    ||||| |||||||| |||||| ||||||||| |||||||||||| ||||||||||||||           ||||| | |||||||||| |||||||||||    
T  9455159 ctttttaagtgtctttttaggttgaattttttgttcctatttaactgtcgttttggtattttaaatgtatgattttttcaattataccatttgtcaatta 9455258  T
Q  805 ttctaatatttttcaataaaattaattaatgctatata 842  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  9455259 ttcttatatttttcaataaaactaattaatgctatata 9455296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 771 - 842
Target Start/End: Complemental strand, 7578301 - 7578230
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| | ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  7578301 ggtatgatctgtcaattataccctttgtcaattattcttatatttttcaataaaactaattaatgctatata 7578230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 3443893 - 3443830
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  3443893 cgttcctttttaagtgtctttttaggatgaatttttcattcctatttaattgtcgttttggtat 3443830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 771 - 839
Target Start/End: Original strand, 25496640 - 25496708
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||||||||||||||||||| ||||| ||||| | | || ||||||||||||| |||||||||||||    
T  25496640 ggtatgatttatcaattataccctttgttaattacttttatctttttcaataaaactaattaatgctat 25496708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 771 - 839
Target Start/End: Original strand, 27231764 - 27231832
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||| ||||||||||||||||  ||||| ||||||||| || ||||||||||||| |||||||||||||    
T  27231764 ggtacgatttatcaattatactctttgttaattattcttatttttttcaataaaactaattaatgctat 27231832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 718 - 842
Target Start/End: Complemental strand, 2743079 - 2742960
Alignment:
Q  718 ttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtatgatttatcaattataccttttgtcaattattctaatattttt 817  Q
    |||| |||||| | ||||||||||||||||||||||||||||| ||| ||||| ||||  ||||   |   ||   ||||||||||||| | ||||||||    
T  2743079 tttttaagtgtttttttagggtgaatttttcgttcctatttaactgttgtttttgtat--ttta---agggtatgatttgtcaattatttttatattttt 2742985  T
Q  818 caataaaattaattaatgctatata 842  Q
    |||||||| ||||||||||||||||    
T  2742984 caataaaactaattaatgctatata 2742960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 717 - 775
Target Start/End: Original strand, 3741536 - 3741594
Alignment:
Q  717 cttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    ||||| |||||||  |||||||||||||||| |||||||||||| ||||||||||||||    
T  3741536 ctttttaagtgtcgttttagggtgaattttttgttcctatttaactgtcgttttggtat 3741594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 839
Target Start/End: Complemental strand, 1530688 - 1530620
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||| ||||| |||||||||| |||||||||||| ||| || ||||||||||||| | |||||||||||    
T  1530688 ggtacgatttgtcaattatacattttgtcaattactcttatttttttcaataaaactgattaatgctat 1530620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 839
Target Start/End: Original strand, 25400461 - 25400529
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||||||||||||||||||| ||||| ||||| | | ||  |||||||||||| |||||||||||||    
T  25400461 ggtatgatttatcaattataccctttgttaattacttttatccttttcaataaaactaattaatgctat 25400529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 16393641 - 16393704
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    ||||| |||| |||||||| ||||| ||||||||||||||||||||||| |||| |||| ||||    
T  16393641 cgttcatttttaagtgtctttttagagtgaatttttcgttcctatttaactgtcttttttgtat 16393704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 29316060 - 29315997
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||  ||||||||||||||||  ||||||||||| ||||||||| ||||    
T  29316060 cgttcctttttaagtgtcgttttagggtgaattttttattcctatttaactgtcgttttagtat 29315997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 710 - 835
Target Start/End: Original strand, 34146102 - 34146238
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgt 798  Q
    ||||||| |||| |||||| | |||| |||||||||||||||| ||||| | |||| |||||||||           ||||| ||||||||||  |||||    
T  34146102 ttcgttcatttttaagtgtttttttatggtgaatttttcgttcttatttgactgtctttttggtattttaagggtacgatttgtcaattatactctttgt 34146201  T
Q  799 caattattctaatatttttcaataaaattaattaatg 835  Q
    |||||| ||| || ||||||||||||| |||||||||    
T  34146202 caattactcttatctttttcaataaaactaattaatg 34146238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 793 - 835
Target Start/End: Complemental strand, 43026761 - 43026719
Alignment:
Q  793 ttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    |||| ||||||||||| ||||||||||||||||||||||||||    
T  43026761 ttttatcaattattcttatatttttcaataaaattaattaatg 43026719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 774 - 842
Target Start/End: Original strand, 14896623 - 14896691
Alignment:
Q  774 atgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||| |||| |||| | ||||||||||| ||| || ||||||||||||| ||||||||| ||||||    
T  14896623 atgatttgtcaaatatatcatttgtcaattactcttatctttttcaataaaactaattaatgttatata 14896691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 842
Target Start/End: Original strand, 4418561 - 4418631
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||| ||||||||||  |||||||||||  || || ||||| ||||||| ||||||||||||||||    
T  4418561 ggtatgatttgtcaattatactctttgtcaattaccctcatcttttt-aataaaactaattaatgctatata 4418631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 842
Target Start/End: Complemental strand, 16599471 - 16599400
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||| |||| ||| ||||||| ||| ||||||| ||| || ||||||||||||| ||||||||| ||||||    
T  16599471 ggtataatttgtcagttataccatttatcaattactcttatctttttcaataaaactaattaatgatatata 16599400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 835
Target Start/End: Complemental strand, 39628384 - 39628319
Alignment:
Q  771 ggtatgatttatcaattataccttttg-tcaattattctaatatttttcaataaaattaattaatg 835  Q
    |||| ||||| |||||||||||||||  ||||||| ||| || ||||||||||||| |||||||||    
T  39628384 ggtacgatttgtcaattatacctttttatcaattactcttatttttttcaataaaactaattaatg 39628319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 835
Target Start/End: Complemental strand, 39637934 - 39637869
Alignment:
Q  771 ggtatgatttatcaattataccttttg-tcaattattctaatatttttcaataaaattaattaatg 835  Q
    |||| ||||| |||||||||||||||  ||||||| ||| || ||||||||||||| |||||||||    
T  39637934 ggtacgatttgtcaattatacctttttatcaattactcttatttttttcaataaaactaattaatg 39637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 712 - 842
Target Start/End: Original strand, 16365652 - 16365793
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg-----------gtatgatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||  |||||| ||||||||| |||||||||||||| ||||||||           ||||||||| |||||||||| ||||||||    
T  16365652 cgttcctttttaagtgtcgttttaggatgaattttttgttcctatttaattatcgttttgatattttaaaggtatgatttgtcaattatactttttgtca 16365751  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| |||||||||||||||| |||||| |||||||||    
T  16365752 attattcttatatttttcaataaaactaattagtgctatata 16365793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 717 - 822
Target Start/End: Original strand, 17557882 - 17557998
Alignment:
Q  717 cttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgtttt-----------ggtatgatttatcaattataccttttgtcaattat 805  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||           |||||||||| ||||||||||| ||||||||||||    
T  17557882 ctttttaagtgtctttttagggtgaatttttcgttcctatttaattgtcgttttgatattttaagggtatgatttgtcaattataccctttgtcaattat 17557981  T
Q  806 tctaatatttttcaata 822  Q
    ||| |||||||||||||    
T  17557982 tcttatatttttcaata 17557998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 32718148 - 32718007
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggt-----------atgatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||| | || |||||||||||||||||||||||| ||||||||||||           || |||| ||||||||||| |||||||    
T  32718148 cgttcctttttaagtgtctttctatggtgaatttttcgttcctatttaactgtcgttttggttttttaaggatataatttgtcaattataccctttgtca 32718049  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
     ||||||| |||||||||||| ||| ||||||||||||||||    
T  32718048 gttattcttatatttttcaattaaactaattaatgctatata 32718007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 706 - 842
Target Start/End: Original strand, 14654858 - 14654989
Alignment:
Q  706 ttcattcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtatgatttatcaattataccttttgtcaattat 805  Q
    ||||| |||||||||| |||||||| ||||| || |||||||||||| ||||||||||||| ||||||||  |||   ||   ||   ||||||||||||    
T  14654858 ttcatccgttcctttttaagtgtctttttagcgtcaatttttcgttcttatttaattgtcgctttggtat--ttt---aagggtatgatttgtcaattat 14654952  T
Q  806 tctaatatttttcaataaaattaattaatgctatata 842  Q
    ||| |||||||||||||||| ||||||||||||||||    
T  14654953 tcttatatttttcaataaaactaattaatgctatata 14654989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 36060357 - 36060294
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||  |||| |||||||||||||||||||||||| ||||||||||||||    
T  36060357 cgttcctttttaagtgtcgttttaaggtgaatttttcgttcctatttaactgtcgttttggtat 36060294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 777 - 839
Target Start/End: Complemental strand, 12436823 - 12436761
Alignment:
Q  777 atttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||||||||||||  ||||||||||| ||| |||||||||||||||| |||||||||||||    
T  12436823 atttatcaattatacgctttgtcaattactcttatatttttcaataaaactaattaatgctat 12436761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 771 - 839
Target Start/End: Original strand, 17201217 - 17201285
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||||||| ||||||||| | ||||||||||| ||| || ||||||||||||| |||||||||||||    
T  17201217 ggtatgatttgtcaattatatcatttgtcaattactcttatctttttcaataaaactaattaatgctat 17201285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 777 - 839
Target Start/End: Complemental strand, 39940399 - 39940336
Alignment:
Q  777 atttatcaattataccttttgtcaattattctaata-tttttcaataaaattaattaatgctat 839  Q
    |||||||||||||||||||||||||| | ||| ||| ||||| ||||||| |||||||||||||    
T  39940399 atttatcaattataccttttgtcaataactcttatatttttttaataaaactaattaatgctat 39940336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 713 - 775
Target Start/End: Complemental strand, 18413517 - 18413455
Alignment:
Q  713 gttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    ||||| ||| |||||||| |||||||| | |||||||||||||||||| |||| |||||||||    
T  18413517 gttcccttttaagtgtctttttagggttattttttcgttcctatttaactgtctttttggtat 18413455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 718 - 760
Target Start/End: Original strand, 28619914 - 28619956
Alignment:
Q  718 ttttcaagtgtctatttagggtgaatttttcgttcctatttaa 760  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  28619914 tttttaagtgtctttttagggtgaatttttcgttcctatttaa 28619956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 5978359 - 5978403
Alignment:
Q  43 aacgtttgtttcaagtttacaaaatataattctaggaataatttt 87  Q
    ||||||||||||||||||| ||||||||||||| | |||||||||    
T  5978359 aacgtttgtttcaagtttataaaatataattctggaaataatttt 5978403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 712 - 839
Target Start/End: Complemental strand, 11992384 - 11992246
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||| |||||| ||||||||  |||||||||||| | || |||||||||           ||||| ||||||||||  | |||||    
T  11992384 cgttcctttttaagtgtctttttaggatgaattttctgttcctatttaactttctttttggtattttaaaggtacgatttgtcaattatacaatctgtca 11992285  T
Q  801 attattctaatatttttcaataaaattaattaatgctat 839  Q
    |||| | | || ||||||| |||||||||||||||||||    
T  11992284 attacttttatctttttcagtaaaattaattaatgctat 11992246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 835
Target Start/End: Complemental strand, 17202924 - 17202860
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    |||||||||| ||||||||||| ||||||||||| | | || ||| ||||||||| |||||||||    
T  17202924 ggtatgatttttcaattataccctttgtcaattacttttatctttatcaataaaactaattaatg 17202860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 786 - 842
Target Start/End: Original strand, 19924893 - 19924949
Alignment:
Q  786 ttataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||| ||||||||||||||| || ||||||||||||| ||||| ||| ||||||    
T  19924893 ttataccatttgtcaattattcttatctttttcaataaaactaattcatgttatata 19924949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 249734 - 249671
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||  |||||| ||||||||| |||||||||||| |||| |||| ||||    
T  249734 cgttcctttttaagtgtcgttttaggatgaattttttgttcctatttaactgtcattttagtat 249671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 36437509 - 36437446
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||| ||||| |||||||| ||| || ||||||||||||| |||||||| |||| |||||||||    
T  36437509 cgtttctttttaagtgtcttttttggatgaatttttcgttactatttaactgtctttttggtat 36437446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 43346848 - 43346785
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||  ||||| |||||||||| |||||||||||| | ||||||| ||||    
T  43346848 cgttcctttttaagtgtcgttttagagtgaattttttgttcctatttaaatctcgttttagtat 43346785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 842
Target Start/End: Original strand, 19931832 - 19931898
Alignment:
Q  776 gatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||| ||| ||||||  ||||||||||||||| || ||||||||||||| ||||| ||| ||||||    
T  19931832 gatttgtcagttatactatttgtcaattattcttatctttttcaataaaactaattcatgttatata 19931898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 771 - 829
Target Start/End: Original strand, 28619980 - 28620038
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaa 829  Q
    |||| ||||| ||||||| ||| ||||||||||| ||| || |||||||||||||||||    
T  28619980 ggtacgatttgtcaattacaccctttgtcaattactcttatctttttcaataaaattaa 28620038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 842
Target Start/End: Original strand, 39614828 - 39614894
Alignment:
Q  776 gatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||| ||||||||| | ||||| ||||| ||| || |||||||| |||| ||||||||||||||||    
T  39614828 gatttgtcaattatatcctttgttaattactcttatctttttcaacaaaactaattaatgctatata 39614894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 771
Target Start/End: Original strand, 37269371 - 37269428
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg 771  Q
    |||||||| ||||||   ||||| |||||||||| |||||||||||| ||||||||||    
T  37269371 ttcctttttaagtgttgttttagagtgaattttttgttcctatttaactgtcgttttg 37269428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 7e-24; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 718 - 842
Target Start/End: Complemental strand, 38434397 - 38434262
Alignment:
Q  718 ttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtatg-----------atttatcaattataccttttgtcaattatt 806  Q
    |||| |||||||  ||||||||||||||||||||||||||||| ||||||||||||||            |||||||||||||||| ||| |||||||||    
T  38434397 tttttaagtgtcgttttagggtgaatttttcgttcctatttaactgtcgttttggtattttaaaggtataatttatcaattataccctttatcaattatt 38434298  T
Q  807 ctaatatttttcaataaaattaattaatgctatata 842  Q
    || |||||||||||||||| |||||| |||||||||    
T  38434297 cttatatttttcaataaaactaattagtgctatata 38434262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 714 - 842
Target Start/End: Complemental strand, 45635615 - 45635479
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtcaat 802  Q
    |||||||| ||||||||   || ||||||||||||||||||||||||||| |||||||||||           ||||||||||||||||| |||||||||    
T  45635615 ttcctttttaagtgtct---taaggtgaatttttcgttcctatttaattgccgttttggtattttaagggtacgatttatcaattataccatttgtcaat 45635519  T
Q  803 tattctaatatttttcaataaaattaattaatgctatata 842  Q
    || ||| |||||||||||||||| ||||||||| ||||||    
T  45635518 tactcttatatttttcaataaaactaattaatgttatata 45635479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 771 - 842
Target Start/End: Complemental strand, 37371502 - 37371432
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  37371502 ggtatgatttatcaattataccctttgtcaattattcttatatttttcaataaaact-attaatgatatata 37371432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 710 - 839
Target Start/End: Original strand, 6949011 - 6949150
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgt 798  Q
    |||||||||||| || ||||| ||||||||||||||| ||||| ||||||| |||| |||||||||           ||||| ||||||||||| |||||    
T  6949011 ttcgttcctttttaaatgtctttttagggtgaatttt-cgttcttatttaactgtctttttggtattttaagtgcacgatttgtcaattataccatttgt 6949109  T
Q  799 caattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||| ||| || ||||||||||||| |||||||||||||    
T  6949110 caattactcttatctttttcaataaaactaattaatgctat 6949150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 712 - 839
Target Start/End: Original strand, 38045332 - 38045471
Alignment:
Q  712 cgttccttttcaagtgtctatttaggg-tgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtc 799  Q
    |||||||||| |||||| | ||||||| ||||||||||||||||||||||  ||| |||||||||           ||||||||||||||||| ||| ||    
T  38045332 cgttcctttttaagtgtgtttttaggggtgaatttttcgttcctatttaacagtctttttggtattttaagggtacgatttatcaattataccctttatc 38045431  T
Q  800 aattattctaatatttttcaataaaattaattaatgctat 839  Q
    ||||| ||| |||| ||||||||||| |||||||||||||    
T  38045432 aattactcttatatctttcaataaaagtaattaatgctat 38045471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 713 - 773
Target Start/End: Original strand, 46195668 - 46195728
Alignment:
Q  713 gttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggt 773  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||| |||| |||||||    
T  46195668 gttccttttcaagtgtctttttagggtgaattttttgttcctatttaactgtctttttggt 46195728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 717 - 835
Target Start/End: Complemental strand, 24074274 - 24074145
Alignment:
Q  717 cttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtcaattat 805  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||||            |||| ||||||||||| |||||||||||     
T  24074274 ctttttaagtgtctttttagggtgaatttttcgttcctatttaattgtctttttagtattttaaggatactatttgtcaattataccctttgtcaattac 24074175  T
Q  806 tctaatatttttcaataaaattaattaatg 835  Q
    ||| |  ||||||||||||| |||||||||    
T  24074174 tcttaactttttcaataaaactaattaatg 24074145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 712 - 839
Target Start/End: Complemental strand, 9089782 - 9089644
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgtttt-----------ggtatgatttatcaattataccttttgtca 800  Q
    |||| ||||| |||||||| ||||||||||  ||||||||||||||||| |||  ||||           |||| |||||||||||| |||| |||||||    
T  9089782 cgtttctttttaagtgtctttttagggtgatattttcgttcctatttaactgtttttttggtgttttaagggtacgatttatcaattgtaccctttgtca 9089683  T
Q  801 attattctaatatttttcaataaaattaattaatgctat 839  Q
    |||| ||| || ||||||||||||| |||||||||||||    
T  9089682 attactcttatctttttcaataaaactaattaatgctat 9089644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 771 - 842
Target Start/End: Complemental strand, 24538402 - 24538331
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||| ||||||| | | ||||||||||||||| |||||||||||||||| |||||| || ||||||    
T  24538402 ggtatgatttgtcaattacaacctttgtcaattattcttatatttttcaataaaactaattagtgttatata 24538331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 33889497 - 33889560
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||  |||||||||||||||| |||||||||||| ||| ||||||||||    
T  33889497 cgttcctttttaagtgtcgttttagggtgaattttttgttcctatttaactgttgttttggtat 33889560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 712 - 774
Target Start/End: Original strand, 49262933 - 49262995
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggta 774  Q
    |||||||||| || ||||| |||||||||||||||| |||||||||||| |||| ||||||||    
T  49262933 cgttcctttttaaatgtctttttagggtgaattttttgttcctatttaactgtctttttggta 49262995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 773 - 839
Target Start/End: Original strand, 50720892 - 50720958
Alignment:
Q  773 tatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||| | ||||||||||| ||||||||||| ||| || ||||||||||||| |||||||||||||    
T  50720892 tatgatgtgtcaattataccatttgtcaattactcttatctttttcaataaaactaattaatgctat 50720958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 713 - 775
Target Start/End: Complemental strand, 54982921 - 54982859
Alignment:
Q  713 gttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    ||||||||| |||||||| ||||||||||||||||||||| ||||||| | || |||||||||    
T  54982921 gttcctttttaagtgtctttttagggtgaatttttcgttcatatttaactatctttttggtat 54982859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 723 - 775
Target Start/End: Complemental strand, 19443726 - 19443674
Alignment:
Q  723 aagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||| |||| |||||||||||||||||||||||| |||| |||||||||    
T  19443726 aagtgtctttttatggtgaatttttcgttcctatttaactgtctttttggtat 19443674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 839
Target Start/End: Complemental strand, 37210082 - 37210014
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    ||||| |||| ||||||||||| ||||||||||||| | || ||||||||||||| |||| ||||||||    
T  37210082 ggtataatttgtcaattataccctttgtcaattatttttatctttttcaataaaactaatcaatgctat 37210014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 17330749 - 17330812
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    ||||| |||| |||||||| |||| |||||||||||||||||||||||| |||  |||||||||    
T  17330749 cgttcttttttaagtgtctttttatggtgaatttttcgttcctatttaactgtatttttggtat 17330812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 45666220 - 45666283
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||| ||||| |||||||| |||||| |||||||||||||| ||||||| |||| |||||||||    
T  45666220 cgtttctttttaagtgtctttttaggatgaatttttcgttcatatttaactgtctttttggtat 45666283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 712 - 774
Target Start/End: Original strand, 53392571 - 53392632
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggta 774  Q
    |||||||||| |||||| | |||| |||||||||||||||||||||||| |||| ||||||||    
T  53392571 cgttcctttttaagtgttt-tttatggtgaatttttcgttcctatttaactgtctttttggta 53392632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 668221 - 668158
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||  |||||||||||||||| |||||||| ||| |||| |||| ||||    
T  668221 cgttcctttttaagtgtcgttttagggtgaattttttgttcctatctaactgtcttttttgtat 668158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 838
Target Start/End: Original strand, 20782459 - 20782526
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgcta 838  Q
    ||||| |||| ||||||||||  ||| ||||||| ||| |||||||||||||||| |||| |||||||    
T  20782459 ggtataatttttcaattatacactttctcaattactcttatatttttcaataaaactaataaatgcta 20782526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 771 - 825
Target Start/End: Complemental strand, 21342307 - 21342253
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaa 825  Q
    |||||||||||||||||||| | ||||| ||||| ||| || |||||||||||||    
T  21342307 ggtatgatttatcaattatatcatttgttaattactcttatctttttcaataaaa 21342253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 784 - 842
Target Start/End: Original strand, 25490466 - 25490524
Alignment:
Q  784 aattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||| ||||||||||| ||| ||  |||||||||||| ||||||||| ||||||    
T  25490466 aattataccatttgtcaattactcttatcattttcaataaaaataattaatgttatata 25490524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 12765106 - 12765147
Alignment:
Q  46 gtttgtttcaagtttacaaaatataattctaggaataatttt 87  Q
    ||||||||||||||||||||||||||| ||  ||||||||||    
T  12765106 gtttgtttcaagtttacaaaatataatcctgagaataatttt 12765147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 839
Target Start/End: Original strand, 23529505 - 23529574
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttt-tcaataaaattaattaatgctat 839  Q
    |||| ||||| ||||||||||||||| ||||||| | | || |||| ||||||||| |||||||||||||    
T  23529505 ggtacgatttgtcaattataccttttctcaattacttttatcttttttcaataaaactaattaatgctat 23529574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 30969982 - 30969941
Alignment:
Q  47 tttgtttcaagtttacaaaatataattctaggaataattttc 88  Q
    ||||||||||||||||||||||||||  | ||||||||||||    
T  30969982 tttgtttcaagtttacaaaatataatcatgggaataattttc 30969941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 840
Target Start/End: Complemental strand, 46196891 - 46196822
Alignment:
Q  772 gtatgatttatcaattataccttttgtcaattattctaata-tttttcaataaaattaattaatgctata 840  Q
    ||||||||| ||||||| ||  ||||||||||| ||| ||| ||||||||||||| ||||||||| ||||    
T  46196891 gtatgatttgtcaattacactatttgtcaattactcttatattttttcaataaaactaattaatgttata 46196822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 712 - 842
Target Start/End: Original strand, 306 - 447
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgtttt-----------ggtatgatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||| ||||||||||| |||||||| |||||||| |||||||||           |||||||||| ||||| ||||| |||||||    
T  306 cgttcctttttaagtgtctttttagggtgaaattttcgtttctatttaactgtcgttttggtatttaaagggtatgatttttcaatcataccctttgtca 405  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| ||| |||||||||||| ||||||||| ||||||    
T  406 attattcttataattttcaataaaactaattaatgttatata 447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 25842100 - 25841959
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||  |||||||| |||||           ||||| ||||| ||||| |||||||    
T  25842100 cgttcctttttaagtgtcgttttagggtgaatttttcgttcctatttatctgtcgtttcggtattttaagggtatgatttgtcaatcataccctttgtca 25842001  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||| ||| |||||||||||||||| ||||||||||||||||    
T  25842000 attaatcttatatttttcaataaaactaattaatgctatata 25841959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 771 - 842
Target Start/End: Original strand, 1272415 - 1272486
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||| |||| |||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||    
T  1272415 ggtatgatttttcaactataccctttgtcaattactcttatatttttcaataaaactaattaatgctatata 1272486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 773 - 839
Target Start/End: Original strand, 27264104 - 27264170
Alignment:
Q  773 tatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||||| ||||||||||| ||||||||||| ||| || |||||||||||||||||||||||||||    
T  27264104 tatgatttgtcaattataccatttgtcaattactcttatctttttcaataaaattaattaatgctat 27264170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 7259855 - 7259730
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtatgatttatcaattataccttttgtcaattattctaat 811  Q
    |||||||||| |||||||| ||||| |||||||||| ||||||||||||  ||||||||| |||  ||||   |   ||   ||||||||||||||| ||    
T  7259855 cgttcctttttaagtgtctttttagagtgaattttttgttcctatttaaccgtcgttttgatat--ttta---agggtatgatttgtcaattattcttat 7259761  T
Q  812 atttttcaataaaattaattaatgctatata 842  Q
    |||||||||||||| ||||||||||||||||    
T  7259760 atttttcaataaaactaattaatgctatata 7259730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 712 - 839
Target Start/End: Original strand, 45646519 - 45646657
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||| |||||||||           ||||| ||||||||||| |||||||    
T  45646519 cgttcctttttaagtgtctttttagagtgaaattttcgttcctatttaactgtctttttggtattttaaaggtacgatttgtcaattataccctttgtca 45646618  T
Q  801 attattctaatatttttcaataaaattaattaatgctat 839  Q
    |||| | |  | ||||||||||||| |||||||||||||    
T  45646619 attacttttttctttttcaataaaactaattaatgctat 45646657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 712 - 842
Target Start/End: Complemental strand, 21959848 - 21959708
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||| ||||| |||||||  |||||||||||| ||| |||||||||||| ||||||||||||||           ||||||||||||||||| |||||||    
T  21959848 cgtttctttttaagtgtcgttttagggtgaatattttgttcctatttaactgtcgttttggtattttaagggtatgatttatcaattataccctttgtca 21959749  T
Q  801 attattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||| ||| |||||| ||||| |||||| || ||||||    
T  21959748 attattcttata-ttttcattaaaactaattagtgttatata 21959708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 712 - 839
Target Start/End: Complemental strand, 45760119 - 45759981
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtc-------gtttt----ggtatgatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||| |||| ||| |||||||||||||||||||| ||||       |||||    ||||| |||| ||||||||||| |||||||    
T  45760119 cgttcctttttaagtgtctttttatggtaaatttttcgttcctatttaactgtcttttagtgtttttaagggtatcatttgtcaattataccctttgtca 45760020  T
Q  801 attattctaatatttttcaataaaattaattaatgctat 839  Q
    |||| ||| || ||| ||||||||| |||||||||||||    
T  45760019 attactcttatctttctcaataaaactaattaatgctat 45759981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 772 - 842
Target Start/End: Complemental strand, 19234086 - 19234016
Alignment:
Q  772 gtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||| ||||||||||| ||||||||||| ||| || |||||||||||||  |||||||||||||||    
T  19234086 gtatgatttttcaattataccctttgtcaattactcttatctttttcaataaaaaaaattaatgctatata 19234016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 710 - 839
Target Start/End: Original strand, 34668599 - 34668739
Alignment:
Q  710 ttcgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgt 798  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||| |||| ||||           ||||| ||||||||||| |||||    
T  34668599 ttcgttcctttttaagtgtctttttagggtgaaattttcgttcctatttaactgtctttttagtattttaagtgtacgatttgtcaattataccctttgt 34668698  T
Q  799 caattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||| | |  | ||||| ||||||| |||||||||||||    
T  34668699 caattacttttttttttttgaataaaactaattaatgctat 34668739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 772 - 842
Target Start/End: Original strand, 375736 - 375806
Alignment:
Q  772 gtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||| | ||||||| ||||||||||||| ||| || ||||| ||||||||||||||||||| ||||    
T  375736 gtatgatttgttaattatatcttttgtcaattactcttatcttttttaataaaattaattaatgctttata 375806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 839
Target Start/End: Original strand, 1405222 - 1405284
Alignment:
Q  777 atttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||| ||||||||||| ||||||||||| |||||||||||| ||||| | |||||||||||||    
T  1405222 atttgtcaattataccatttgtcaattactctaatatttttaaataacactaattaatgctat 1405284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 712 - 839
Target Start/End: Original strand, 20841240 - 20841376
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtca 800  Q
    |||||||||| |||||||  ||||||||||| |||| |||| ||||||| |||| |||||||||           ||||| ||||||||||| |||||||    
T  20841240 cgttcctttttaagtgtcattttagggtgaaattttggttcttatttaactgtctttttggtattttaagggtacgatttgtcaattataccatttgtca 20841339  T
Q  801 attattctaatatttttcaataaaattaattaatgctat 839  Q
    ||||  || || ||||||||||||| |||||||||||||    
T  20841340 atta--cttatttttttcaataaaactaattaatgctat 20841376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 839
Target Start/End: Original strand, 2093765 - 2093833
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    |||||||||| ||||||||||| ||||||||||| | | || ||||||| | |||||||||||||||||    
T  2093765 ggtatgatttgtcaattataccctttgtcaattacttttatctttttcagtcaaattaattaatgctat 2093833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 835
Target Start/End: Original strand, 5493542 - 5493606
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    |||| ||||| ||||||||||| ||||||||||| ||| || ||||||||||||| |||||||||    
T  5493542 ggtacgatttgtcaattataccctttgtcaattactcttatctttttcaataaaactaattaatg 5493606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 842
Target Start/End: Original strand, 23272054 - 23272114
Alignment:
Q  782 tcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||| |||| ||||||||||| || |||||||||||||  |||||||||||||||    
T  23272054 tcaattatacattttctcaattattcttatctttttcaataaaacaaattaatgctatata 23272114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 771 - 842
Target Start/End: Original strand, 9588734 - 9588805
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||||||||||||||| ||||||||||| |   || |||||||| |||| ||||||||| ||||||    
T  9588734 ggtatgatttatcaattataccctttgtcaattactaatatctttttcaaaaaaactaattaatgttatata 9588805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 16237738 - 16237675
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||| ||||||   |||||||||||||||||||| |||| |||||||||    
T  16237738 cgttcctttttaagtgtctttttaggaataatttttcgttcctatttaactgtctttttggtat 16237675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 21934675 - 21934612
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||| ||||| |||||||  |||||||||||||||| |||||||||||| ||||||||| ||||    
T  21934675 cgtttctttttaagtgtcgttttagggtgaattttttgttcctatttaactgtcgttttagtat 21934612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 712 - 839
Target Start/End: Complemental strand, 37031132 - 37030995
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat----------gatttatcaattataccttttgtcaa 801  Q
    ||||| |||| |||||||| |||| |||||||||| ||||||||||| | |||| |||||||||          ||||| ||||||||||| |||| |||    
T  37031132 cgttcatttttaagtgtctttttatggtgaattttccgttcctattttactgtctttttggtattttaaattacgatttgtcaattataccctttgccaa 37031033  T
Q  802 ttattctaatatttttcaataaaattaattaatgctat 839  Q
    ||| | | |  ||||||||||||| |||||||||||||    
T  37031032 ttacttttagctttttcaataaaactaattaatgctat 37030995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 770 - 842
Target Start/End: Original strand, 19578320 - 19578392
Alignment:
Q  770 tggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||| ||||| ||||||||||| ||||||||||  |||  | ||||||||||||| ||||||||| ||||||    
T  19578320 tggtacgatttgtcaattataccctttgtcaattgctcttgtctttttcaataaaactaattaatgttatata 19578392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 723 - 775
Target Start/End: Original strand, 45667402 - 45667454
Alignment:
Q  723 aagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||||||| || |||||||||||||||||||| |||| |||| ||||    
T  45667402 aagtgtctatttagagtaaatttttcgttcctatttaactgtctttttagtat 45667454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 38751262 - 38751199
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||  |||||||||||||||| |||| ||||||  ||||||||| ||||    
T  38751262 cgttcctttttaagtgtcgttttagggtgaattttttgttcttatttatatgtcgttttagtat 38751199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 773 - 834
Target Start/End: Complemental strand, 2440744 - 2440684
Alignment:
Q  773 tatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaat 834  Q
    |||||||| ||||||||||| ||||||||||| | | ||  |||||||||||||||||||||    
T  2440744 tatgatttgtcaattataccctttgtcaattagttttat-cttttcaataaaattaattaat 2440684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 782 - 835
Target Start/End: Complemental strand, 20141095 - 20141042
Alignment:
Q  782 tcaattataccttttgtcaattattctaatatttttcaataaaattaattaatg 835  Q
    ||||||||||||||| ||||||| ||| || |||||||||||||  ||||||||    
T  20141095 tcaattataccttttctcaattactcttatctttttcaataaaacaaattaatg 20141042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 794 - 839
Target Start/End: Original strand, 45667468 - 45667513
Alignment:
Q  794 tttgtcaattattctaatatttttcaataaaattaattaatgctat 839  Q
    ||||||||||| | | || |||||||||||||||||||||||||||    
T  45667468 tttgtcaattactttgatctttttcaataaaattaattaatgctat 45667513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 202243 - 202306
Alignment:
Q  712 cgttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttggtat 775  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| || |||| |||||||||    
T  202243 cgttcctttttaagtgtctttttagggtgaatttttcgttcctattcaactgtctttttggtat 202306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 794 - 842
Target Start/End: Complemental strand, 46650 - 46602
Alignment:
Q  794 tttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  46650 tttgtcaattattcttataattttcaataaaattaattaatgctatata 46602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 772 - 842
Target Start/End: Complemental strand, 6487 - 6417
Alignment:
Q  772 gtatgatttatcaattataccttttgtcaatta-ttctaatatttttcaataaaattaattaatgctatata 842  Q
    ||||||||||||||||||| | ||||||||||| |||| || |||||||||||||||||||| || ||||||    
T  6487 gtatgatttatcaattatatcctttgtcaattacttct-atgtttttcaataaaattaattattgttatata 6417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 771 - 842
Target Start/End: Original strand, 14910 - 14980
Alignment:
Q  771 ggtatgatttatcaattataccttttgtcaattattctaatatttttcaataaaattaattaatgctatata 842  Q
    |||||||||| |||||||||||||||||||||||  || ||  |||||||||||| ||||||||| ||||||    
T  14910 ggtatgatttgtcaattataccttttgtcaattaccctcat-cttttcaataaaactaattaatgttatata 14980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 714 - 760
Target Start/End: Complemental strand, 37076 - 37030
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaa 760  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||    
T  37076 ttcctttttaagtgtctttttaggatgaatttttcgttcctatttaa 37030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 732 - 835
Target Start/End: Original strand, 256685 - 256799
Alignment:
Q  732 tttagggtgaatttttcgttcctatttaattgtcgttttggtat-----------gatttatcaattataccttttgtcaattattctaatatttttcaa 820  Q
    |||||||||| |||||||||||||||||| |||| |||||||||            |||| ||||||||||| ||||||||||  ||| || ||||||||    
T  256685 tttagggtgattttttcgttcctatttaactgtctttttggtattttaagagtaccatttgtcaattataccatttgtcaatttctcttatctttttcaa 256784  T
Q  821 taaaattaattaatg 835  Q
    ||||| |||||||||    
T  256785 taaaactaattaatg 256799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 771
Target Start/End: Complemental strand, 272541 - 272484
Alignment:
Q  714 ttccttttcaagtgtctatttagggtgaatttttcgttcctatttaattgtcgttttg 771  Q
    |||||||| |||||| | ||||   |||||||||||||||||||||| ||||||||||    
T  272541 ttcctttttaagtgtatttttaaaatgaatttttcgttcctatttaactgtcgttttg 272484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5398 times since January 2019
Visitors: 5756