View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_high_11 (Length: 503)

Name: NF0784_high_11
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_high_11
NF0784_high_11
[»] chr4 (1 HSPs)
chr4 (29-493)||(21549613-21550076)
[»] chr6 (2 HSPs)
chr6 (257-420)||(24077844-24078008)
chr6 (381-418)||(21198116-21198153)
[»] chr5 (2 HSPs)
chr5 (252-406)||(34841525-34841679)
chr5 (94-201)||(10628633-10628740)
[»] scaffold0256 (1 HSPs)
scaffold0256 (94-239)||(17561-17706)
[»] chr3 (3 HSPs)
chr3 (118-239)||(10611601-10611722)
chr3 (425-465)||(9602799-9602839)
chr3 (271-303)||(16263290-16263322)
[»] scaffold0184 (1 HSPs)
scaffold0184 (425-493)||(30407-30475)
[»] scaffold0078 (1 HSPs)
scaffold0078 (425-493)||(42369-42437)
[»] scaffold0006 (1 HSPs)
scaffold0006 (252-304)||(1416-1468)


Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 29 - 493
Target Start/End: Complemental strand, 21550076 - 21549613
Alignment:
Q  29 actttacacatgccatgtttaataatctagactattaaacaggtttaaggaatttacgattaactaacatcttcagacgaatggtacacataccttgaac 128  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21550076 actttacacatgccatgtttaataatctagactattaaacaggcttaaggaatttacgattaactaacatcttcagacaaatggtacacataccttgaac 21549977  T
Q  129 ttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaatactcctttttcgtgcacacatgataagagcagcct 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |    
T  21549976 ttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcaaaatactcctttttcgggcacacatgataagagcagctt 21549877  T
Q  229 gattccaagacgcaacnnnnnnnggtttccaacttgtgagtgctagtgcacccccactctcaaaaccatcttcatctaggaaactacaacttgaacgaaa 328  Q
    ||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21549876 gat-ccaagacgcaacttttttcggtttccaacttgtgagtgctagtgcacccccactctcataaccatcttcatctaggaaactacaacttgaacgaaa 21549778  T
Q  329 taactaccattttctcctttgttaggacaattcttctagaagggaccgagcatatgacaaatgaaacatcaatatttcgatttatcaaaccctttagacc 428  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21549777 taactaccattttctcctttgttaggacaattcttcttgaagggaccgagcatatgacaaatgaaacatcaatatttcgatttatcaaaccctttagacc 21549678  T
Q  429 ttgacttccctttgccctttcctatatgctcactcctttgccttaaaacattgaagccttcgcca 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21549677 ttgacttccctttgccctttcctatatgctcactcctttgccttaaaacattcaagccttcgcca 21549613  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 420
Target Start/End: Original strand, 24077844 - 24078008
Alignment:
Q  257 ccaacttgtgagtgctagtgcacccccactctcaaaaccatcttcatct-aggaaactacaacttgaacgaaataactaccattttctcctttgttagga 355  Q
    |||||||||||  |||| ||||||| |||||||| |||||||||||||  | |  | | |||||| |||  || ||||||||||| |||| |||| ||||    
T  24077844 ccaacttgtgatcgctaatgcacccgcactctcataaccatcttcatcggacgccattgcaacttaaacagaagaactaccatttcctcccttgtcagga 24077943  T
Q  356 caattcttctagaagggaccgagcatatgacaaatgaaacatcaatatttcgatttatcaaaccc 420  Q
    |||| ||||| |||| ||||  |  |||||||||||||| ||| ||| || ||||||||||||||    
T  24077944 caatccttcttgaagtgaccatgtttatgacaaatgaaatatcgatactttgatttatcaaaccc 24078008  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 21198116 - 21198153
Alignment:
Q  381 tatgacaaatgaaacatcaatatttcgatttatcaaac 418  Q
    |||||||||||||||||| |||||||||||||||||||    
T  21198116 tatgacaaatgaaacatcgatatttcgatttatcaaac 21198153  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 406
Target Start/End: Original strand, 34841525 - 34841679
Alignment:
Q  252 ggtttccaacttgtgagtgctagtgcacccccactctcaaaaccatcttcatctaggaa---actacaacttgaacgaaataactaccattttctccttt 348  Q
    ||||||||| ||||||  |||||||||||  |||||||  |||||||||||||  ||||   ||| ||||||||||  || ||||||||||  | || ||    
T  34841525 ggtttccaatttgtgaccgctagtgcacctgcactctcctaaccatcttcatc--ggaagtcactgcaacttgaaccgaagaactaccattgcccccatt 34841622  T
Q  349 gttaggacaattcttctagaagggaccgagcatatgacaaatgaaacatcaatatttc 406  Q
     |||||||||| ||||| |||| || || || |||||||||||||||||| |||||||    
T  34841623 -ttaggacaatgcttcttgaagtgatcgggcttatgacaaatgaaacatcgatatttc 34841679  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 10628740 - 10628633
Alignment:
Q  94 aacatcttcagacgaatggtacacataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaat 193  Q
    ||||| || |||||||| |||| ||||||||||| ||| |||||||| || || ||||| | ||| ||||| | | |||| ||||||||||| || || |    
T  10628740 aacattttgagacgaatagtactcataccttgaattttacaagccttattattaccaaggcaaacaactccaccttctttcagctctaaagtttcaaagt 10628641  T
Q  194 actccttt 201  Q
    ||||||||    
T  10628640 actccttt 10628633  T

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Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 17706 - 17561
Alignment:
Q  94 aacatcttcagacgaatggtacacataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaat 193  Q
    ||||| || ||||| || |||| ||||||||||| ||| |||||||| || || ||||| ||||| ||||| | | |||| |||||||| || || || |    
T  17706 aacattttgagacggatagtacccataccttgaattttacaagccttattattcccaaggcgaactactccaccttctttcagctctaacgtttcaaagt 17607  T
Q  194 actcctttttcgtgcacacatgataagagcagcctgattccaagac 239  Q
    |||||||| |||  || |  ||||||||||| || || ||||||||    
T  17606 actcctttctcggacagatgtgataagagcatccagagtccaagac 17561  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 10611601 - 10611722
Alignment:
Q  118 ataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaatactcctttttcgtgcacacatgat 217  Q
    |||||||||| ||| |||||||| ||||||||||| ||||| ||||| | | |||  |||||||| || || || ||||||||| |||  || |  ||||    
T  10611601 ataccttgaattttacaagccttattgtttccaaggcgaactactccaccttcttccagctctaacgtttcaaagtactcctttctcggacagatgtgat 10611700  T
Q  218 aagagcagcctgattccaagac 239  Q
    ||||||| || || ||||||||    
T  10611701 aagagcacccagagtccaagac 10611722  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 465
Target Start/End: Complemental strand, 9602839 - 9602799
Alignment:
Q  425 gaccttgacttccctttgccctttcctatatgctcactcct 465  Q
    |||||||| ||||||||||| |||||| |||||||||||||    
T  9602839 gaccttgatttccctttgccttttcctctatgctcactcct 9602799  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 16263290 - 16263322
Alignment:
Q  271 ctagtgcacccccactctcaaaaccatcttcat 303  Q
    ||||||||||| |||||||||||||||||||||    
T  16263290 ctagtgcacccgcactctcaaaaccatcttcat 16263322  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 493
Target Start/End: Complemental strand, 30475 - 30407
Alignment:
Q  425 gaccttgacttccctttgccctttcctatatgctcactcctttgccttaaaacattgaagccttcgcca 493  Q
    ||||| |||||||||||||| |||||| |||| |||||| ||  |||| ||||||| |||| |||||||    
T  30475 gacctcgacttccctttgccttttcctctatggtcactcattctccttgaaacattcaagctttcgcca 30407  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 493
Target Start/End: Original strand, 42369 - 42437
Alignment:
Q  425 gaccttgacttccctttgccctttcctatatgctcactcctttgccttaaaacattgaagccttcgcca 493  Q
    ||||| |||||||||||||| |||||| |||| |||||| ||  |||| ||||||| |||| |||||||    
T  42369 gacctcgacttccctttgccttttcctctatggtcactcattctccttgaaacattcaagctttcgcca 42437  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 1416 - 1468
Alignment:
Q  252 ggtttccaacttgtgagtgctagtgcacccccactctcaaaaccatcttcatc 304  Q
    |||| |||||||||||   ||||||||||| |||||||| |||||||||||||    
T  1416 ggttcccaacttgtgaccactagtgcacccgcactctcataaccatcttcatc 1468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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