View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_high_18 (Length: 457)
Name: NF0784_high_18
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 42911161 - 42910794
Alignment:
| Q |
1 |
atataccttgtgggaggtgctttatctggaactgcttatatctgggatgtatgtatgcaaaccttcaattatttgatttgtctaattttannnnnnn-gc |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42911161 |
atataccttgtgggaggtgctttatctggaactgcttatatctgggatgtatgtatgcaaaccttcaattatttgatttgtctaattttattttttttgc |
42911062 |
T |
|
| Q |
100 |
taattaaacatccaaaaacctagctatttcctcaattagacattttgagtataatagtttattgaatatgacttaaaatgggtgaatgtttgatcaaaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911061 |
taattaaacatccaaaaacctagctatttcctcaattagacattttgagtataataatttattgaatatgacttaaaatgggtgaatgtttgatcaaaaa |
42910962 |
T |
|
| Q |
200 |
tttgatcctaagactcccttacatgtaaggtttaatgctatatttagattattttgtttgtgaaattgtgttgttaatgatgaattgtaggtgactagtg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42910961 |
tttgatcctaagactcccttacatgtaaggtttaatgctatatttggattattttgtttgtgaaattgtgttgtttatgatgaattgtaggtgactagtg |
42910862 |
T |
|
| Q |
300 |
gaaaattgttgaagacttggacagctcattataaatctatagaccacataatattttctaatgatgat |
367 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42910861 |
gaaaattgttgaagacttggacagctcattataaatctgtagaccacataatattttctaatgatgat |
42910794 |
T |
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