View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_high_19 (Length: 456)
Name: NF0784_high_19
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 42911137 - 42911498
Alignment:
| Q |
1 |
ataaagcacctcccacaaggtatatgccttcttttgtgcaagaaagtggcccaatggcttccactgtgtaattcaaaagtggttgttgcggctgaaataa |
100 |
Q |
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| T |
42911137 |
ataaagcacctcccacaaggtatatgccttcttttgtgcaagaaagtggcccaatggcctccactgtgtaattcaaaagtggttgttgcggctgaaataa |
42911236 |
T |
|
| Q |
101 |
taaaatataagtnnnnnnntagagattttgacatgatatttagtttaaaagatataaaatgcaatattttggtcataattattgaactttcatggtagta |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911237 |
taaaatataagtaaaaaaatagagattttgacatgatatttaatttaaaagatataaaatgcaatattttggtcataattattgaactttcatggtagta |
42911336 |
T |
|
| Q |
201 |
tatgctagtaagcaataagcacaagtaatgtttaataagccatcaagtggtataatagtctttaaacaacaagatcacaaattaaaacnnnnnnnncact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
42911337 |
tatgctagtaagcaataagcacaagtaatgtttaataagccatcaagtggtataatagtctttaaacaacatgatcacaaattaaaacaaaaaaaacact |
42911436 |
T |
|
| Q |
301 |
ccttccatgttaccactacgacaatgacatgaaagctctataaagtctaaatttccatgtga |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911437 |
ccttccatgttaccactacgacaatgacatgaaagctctataaagtctaaatttccatgtga |
42911498 |
T |
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