View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0784_high_2 (Length: 767)
Name: NF0784_high_2
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 42 - 505
Target Start/End: Complemental strand, 43296278 - 43295815
Alignment:
| Q |
42 |
atatagttcagaaaatgttgttaggccacaccatttatcagccatcatagagtatggtggctacaacctaagatgcctacttgaaacaatcaaatcaaat |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43296278 |
atatagttcagaaaatgttgttaggccacaccatttatcagccatcatagagtatggtggctacaacctaagatgcctacttgaaacaatcaaatcaaat |
43296179 |
T |
|
| Q |
142 |
tcaaaataaatttatgaaagtggaatggcttaatcaaacattaaactcgtattagatgtaattgtaagtataaaattaatttatagaaatatgatttagt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43296178 |
tcaaaataaatttatgaaagtggaatggcttaatcaaacattagactcgtattagatgtaattgtaagtataaaattaatttatagaaatatgatttagt |
43296079 |
T |
|
| Q |
242 |
taaactatttgttaaaatcggtgaaacattagtcacgtattagatgaatgttctttttctaacatcatttcttttatataggtttcatcactttatgtat |
341 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43296078 |
taaactatatgttaaaatcggtgaaacattagtctcgtattagatgaatattctttttctaacatcatttcttttatataggtctcatcactttatgtat |
43295979 |
T |
|
| Q |
342 |
gacttatttctaaaatgtaagacctatattgattttatctaattaaataatgagtgttgnnnnnnnnntattcctagaactcatctaaaacaaatttaag |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43295978 |
gacttatttctaaaatgtaagacctatattgattttatctaattaaataatgagtgttgaaaaaaatatattcctagaactcatctaaaacaaatttaag |
43295879 |
T |
|
| Q |
442 |
tatcgggttttcaatacattatctagaggaagcaattggttaatcgaataaagttcttttttga |
505 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43295878 |
tatcgggttttcaatacaatatctagaggaagcaattggttaatcgaataaagttctcttttga |
43295815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 557 - 628
Target Start/End: Complemental strand, 43295813 - 43295742
Alignment:
| Q |
557 |
tgggtttttgaaccctacatttacctgttgagatagttttctgagtggtttccttaatcttgttggggtgga |
628 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43295813 |
tgggtttctgaaccctacatttacctgttgagatagttttctgagtggtttccttaatcttgttggggtgga |
43295742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6231 times since January 2019
Visitors: 5764