View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_high_20 (Length: 453)
Name: NF0784_high_20
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 50 - 444
Target Start/End: Complemental strand, 40255249 - 40254855
Alignment:
| Q |
50 |
attagaactcgaaggaaatgctaaactcaaagaagttggaacaacactttccttatcataaatattgttagataaataattctccttgttgatgctatga |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40255249 |
attagaactcgaaggaaatgctaaactcaaagaagttggaacaacactttccttatcataaatattgttagataaataattctccttgttgatgctatga |
40255150 |
T |
|
| Q |
150 |
agtgaaaggctagaggaagcaacatcatcaatatttgcatttactattccaaatttgttttgatgaannnnnnnnnnnnnnaaggccatgttgcatgatt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40255149 |
agtgaaaggctagaggaagcaacatcatcaatatttgcatttactattccaaatttgttttgatgaattttttgcttttttaaggccatgttgcatgatt |
40255050 |
T |
|
| Q |
250 |
caactattcttgtgttagatgaattcattgaggaaattttcttctcattatttgattggaggctagacaaagataaatcacatgaaagttgttgctttgg |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40255049 |
caactattcttgtgttagatgaattcattgaggaaattttcttctcattatttgattggaggctagacaaagataaatcacatgaaagttgttgctttgg |
40254950 |
T |
|
| Q |
350 |
atgatcaagttgtggaatagtactatatgtcttagcttgtgtagatggctgaaaatttcttattaacaattgaagttgatctcttgcttcatctc |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40254949 |
atgatcaagttgtggaatagtactatatgtcttagcttgtgtagatggctgaaaatttcttattaacaattgaagttgatctcttgcttcatctc |
40254855 |
T |
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