View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_high_25 (Length: 430)
Name: NF0784_high_25
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 17608332 - 17608495
Alignment:
| Q |
29 |
agaagaagtggtggaacatgatgagattagtcccattggtgatggtgaagatgatgaagatgttgtttccaccttaaccatggaaagggttgctgctgct |
128 |
Q |
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| T |
17608332 |
agaagaagtggtggaacatgatgagattagtcccattggtgatggtgaagatgatgaagatgttgtttccaccttaaccatggaaagggttgctgctgct |
17608431 |
T |
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| Q |
129 |
aagaaattcattgagagtcattataagtctcagatgaaacacattcaagaacgcaaagaaaggt |
192 |
Q |
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| T |
17608432 |
aagaaattcattgagagtcattataagtctcaaatgaaacacattcaagaacgcaaagaaaggt |
17608495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 328 - 418
Target Start/End: Original strand, 17608628 - 17608718
Alignment:
| Q |
328 |
ataatcatgttattggtgcgaagtatcacctggttttgccacctctccaaaccgtgnnnnnnncacccacattgattgaacccgaaatatt |
418 |
Q |
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| T |
17608628 |
ataatcatgttattggtgcgaagtatcacctggttttgccacctctccaaaccgtgtttttttcacccacattgattgaacccgaaatatt |
17608718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 17608542 - 17608603
Alignment:
| Q |
239 |
gtcttggttaagatctgtttgtttcactttgcatgttg-ttgatgacctccttttgtgaaat |
299 |
Q |
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| T |
17608542 |
gtcttggttaagatctgtttgtttcactttgcatgttgtttgatgacctccttttgtgaaat |
17608603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 17667292 - 17667327
Alignment:
| Q |
246 |
ttaagatctgtttgtttcactttgcatgttgttgatg |
282 |
Q |
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| T |
17667292 |
ttaagatctgtttgtt-cactttgcatgttgttgatg |
17667327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 17704800 - 17704835
Alignment:
| Q |
246 |
ttaagatctgtttgtttcactttgcatgttgttgatg |
282 |
Q |
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| T |
17704800 |
ttaagatctgtttgttt-actttgcatgttgttgatg |
17704835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 48256410 - 48256479
Alignment:
| Q |
123 |
gctgctaagaaattcattgagagtcattataagtctcagatgaaacacattcaagaacgcaaagaaaggt |
192 |
Q |
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| T |
48256410 |
gctgctaagaaattcattgagaatcattacagggcacagatgaaaaatattcaagatcggaaagagaggt |
48256479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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