View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_high_32 (Length: 378)
Name: NF0784_high_32
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 53677952 - 53677728
Alignment:
| Q |
10 |
ttatatactctgaattgaaaaatcagcataataatttaacaaatctttaagtgaaagttgcacatgctcataaggcaattcttattctggaagctataaa |
109 |
Q |
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| T |
53677952 |
ttatatactctgaattgaaaaatcagcataataatttaacaaatctttaagtgaaagttgcacatgctcataaggcaattcttattctggaagctataaa |
53677853 |
T |
|
| Q |
110 |
tggattttgaatattcttggaagaggggaaataaaaaaggaatccattannnnnnnnnnnnataccacgctaggaaggtcatctgttttaaagtagagta |
209 |
Q |
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| T |
53677852 |
tggattttgaatattcttggaagaggggaaataaaaaaggaatccattcttttttatttttataccacgctagaaaggtcatctgttttaaagtagagta |
53677753 |
T |
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| Q |
210 |
aataaaaaaattgtaagaatgtttc |
234 |
Q |
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||||||||| |||| |||||||||| |
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| T |
53677752 |
aataaaaaatttgttagaatgtttc |
53677728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 53677399 - 53677316
Alignment:
| Q |
284 |
accacattttaatattttgaaattgccaaatattaatcattttacttcttcgtttgaacttgattaacttagttttgtattcat |
367 |
Q |
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| T |
53677399 |
accacattttaatattttgaaattgccaaatattaatcattttacttcttcgtttgaacttgattaacttagttttgtattcat |
53677316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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