View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_high_45 (Length: 320)
Name: NF0784_high_45
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 34024877 - 34025015
Alignment:
| Q |
84 |
atgaatgctacagtaaaacacacaaaaatttatcttcatcggagaaacttcaccagtgaccagcgcaccggaattcgcttccgcggcgccggagttacaa |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34024877 |
atgaatgctacagtaaaacacacaaaaatttatcttcatcggagaaacttcgccagtgaccagcgcaccggaattcgcttccgcggcgccggagttacaa |
34024976 |
T |
|
| Q |
184 |
tcagaagcttcttttattttcattcagatctcttcaaag |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
34024977 |
tcagaagcttcttttattttcattcagatctcttcaaag |
34025015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 1061532 - 1061394
Alignment:
| Q |
84 |
atgaatgctacagtaaaacacacaaaaatttatcttcatcggagaaacttcaccagtgaccagcgcaccggaattcgcttccgcggcgccggagttacaa |
183 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1061532 |
atgaatgctacagtaaaacacacaaaaatttatcttcatcggagaaacttcgccagtgaccagcgcaccggaattcgcttccgcggcgccggagttacaa |
1061433 |
T |
|
| Q |
184 |
tcagaagcttcttttattttcattcagatctcttcaaag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
1061432 |
tcagaagcttcttttattttcattcagatctcttcaaag |
1061394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 14936262 - 14936400
Alignment:
| Q |
84 |
atgaatgctacagtaaaacacacaaaaatttatcttcatcggagaaacttcaccagtgaccagcgcaccggaattcgcttccgcggcgccggagttacaa |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
14936262 |
atgaatgctacagtaaaacacacaaaaatttatcttcattggagaaacttcaccggtgaccacagcaccggaattcgcttccgccgcgccggagttacaa |
14936361 |
T |
|
| Q |
184 |
tcagaagcttcttttattttcattcagatctcttcaaag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14936362 |
tcagaagcttcttttattttcattcagatctcttcaaag |
14936400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 34977664 - 34977802
Alignment:
| Q |
84 |
atgaatgctacagtaaaacacacaaaaatttatcttcatcggagaaacttcaccagtgaccagcgcaccggaattcgcttccgcggcgccggagttacaa |
183 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||||||||||| |
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|
| T |
34977664 |
atgaatgctacagtaaaacgcacaataatttatcttcatcggagaaacttcaccggtgaccatagcatcggaattcgcttccgccgcgccggagttacaa |
34977763 |
T |
|
| Q |
184 |
tcagaagcttcttttattttcattcagatctcttcaaag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977764 |
tcagaagcttcttttattttcattcagatctcttcaaag |
34977802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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