View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_high_48 (Length: 316)

Name: NF0784_high_48
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_high_48
NF0784_high_48
[»] chr2 (6 HSPs)
chr2 (30-304)||(40056254-40056527)
chr2 (89-178)||(38356837-38356926)
chr2 (94-178)||(35063612-35063696)
chr2 (77-205)||(1299954-1300080)
chr2 (94-178)||(29453643-29453727)
chr2 (116-198)||(45513049-45513131)
[»] chr4 (7 HSPs)
chr4 (145-283)||(39484928-39485067)
chr4 (94-205)||(32641905-32642015)
chr4 (89-234)||(12007454-12007599)
chr4 (128-183)||(50072020-50072075)
chr4 (89-175)||(12007919-12008005)
chr4 (89-190)||(32641168-32641269)
chr4 (89-157)||(2486972-2487040)
[»] scaffold0119 (1 HSPs)
scaffold0119 (77-228)||(36-185)
[»] chr6 (2 HSPs)
chr6 (77-228)||(26670609-26670758)
chr6 (117-178)||(12029351-12029412)
[»] chr8 (5 HSPs)
chr8 (89-192)||(41456052-41456155)
chr8 (114-183)||(13231843-13231912)
chr8 (114-194)||(2623232-2623312)
chr8 (94-178)||(7043101-7043185)
chr8 (128-178)||(35595-35645)
[»] chr1 (6 HSPs)
chr1 (94-175)||(28651687-28651768)
chr1 (89-206)||(27818728-27818844)
chr1 (94-178)||(25476083-25476167)
chr1 (129-203)||(48621163-48621237)
chr1 (94-205)||(44634034-44634145)
chr1 (128-205)||(48621841-48621918)
[»] chr5 (5 HSPs)
chr5 (97-178)||(24153970-24154051)
chr5 (87-183)||(17115698-17115794)
chr5 (94-205)||(31079720-31079831)
chr5 (89-205)||(24153192-24153308)
chr5 (114-170)||(29108111-29108166)
[»] chr3 (8 HSPs)
chr3 (89-178)||(45004705-45004794)
chr3 (113-205)||(45146663-45146755)
chr3 (94-174)||(51489853-51489933)
chr3 (128-183)||(50766027-50766082)
chr3 (94-183)||(50823970-50824059)
chr3 (94-183)||(50851801-50851890)
chr3 (117-173)||(35744535-35744591)
chr3 (102-194)||(45005505-45005597)
[»] chr7 (2 HSPs)
chr7 (94-175)||(24555973-24556054)
chr7 (117-178)||(35263740-35263801)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 304
Target Start/End: Original strand, 40056254 - 40056527
Alignment:
Q  30 tcaatcgctagagaaggtgtgaagaacggcacgtaagtgccattgaactattagataatgggagaattacactcacctccgctgaggtttatgaaaacga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  40056254 tcaatcgctagagaaggtgtgaagaacggcacgtaagtgccattgaactattagataatgggaaaattacactcacctccgctgaggtttatgaaaatga 40056353  T
Q  130 cactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatcccttgttttctaagacagttaactttct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40056354 cactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatcccttgtttgctaagacagttaactttct 40056453  T
Q  230 gttaatttctttagagaattttccactaatatttaac-gtggttcttcattattgttgtatagtttgcttcctctc 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  40056454 gttaatttctttagagaattttccactaatatttaacggtggttcttcattattgttg--tagtttgcttcctctc 40056527  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 38356837 - 38356926
Alignment:
Q  89 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    |||| |||||||||||||||| ||||||| ||| || | ||||| |||||||| |||||||| ||||| |||||||||||||||||||||    
T  38356837 gggaaaattacactcacctcccctgaggtctattaatatgacacaaacaccccctctagttttaaaacatacattaacctcccttaagtt 38356926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 35063612 - 35063696
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    ||||||||||||||||  |||||||||| |||| | |||| |||| || |||||||| ||||||||||| |||||||||||||||    
T  35063612 aattacactcacctcccttgaggtttattaaaatgtcactgacactccctctagttttaaaacttacatgaacctcccttaagtt 35063696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 1299954 - 1300080
Alignment:
Q  77 ctattagataatgggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaag 176  Q
    ||||||| ||||| || ||||||||||||||||  ||| |||||| |||| |||||  ||||||||||||||||||||||| ||  ||||||| || | |    
T  1299954 ctattagctaatgagaaaattacactcacctcctttgaagtttattaaaatgacac--acaccccttctagtttcaaaactaacgctaacctctctaatg 1300051  T
Q  177 ttctcatataatagacaatcacatccctt 205  Q
    |||| ||  ||||||||| ||| ||||||    
T  1300052 ttctaatgaaatagacaaacacctccctt 1300080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 29453727 - 29453643
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    ||||||| |||| ||| | ||||||||||||||  ||||||||||| | ||||||||  |||||||||||||||||| |||||||    
T  29453727 aattacattcacatcccccgaggtttatgaaaataacactaacacctcctctagttttgaaacttacattaacctcctttaagtt 29453643  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 45513131 - 45513049
Alignment:
Q  116 gtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcac 198  Q
    |||||| |||||||||   ||||||| ||||||||| ||||| ||||||||||||| |||||| | ||  |||||||||||||    
T  45513131 gtttattaaaacgacatcgacaccccctctagtttcgaaactaacattaacctcccgtaagttttaatcaaatagacaatcac 45513049  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 283
Target Start/End: Complemental strand, 39485067 - 39484928
Alignment:
Q  145 tagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatcccttgttttctaagacagttaactttctgttaatttctttaga 244  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||| | || |||||||||| |||  ||| || ||||| || |||||| ||||||||||    
T  39485067 tagtttcaaaacttacactaacctcgcttaagttctcatgtaataaataagcacatcccttctttgttaacactgttaaattactgttactttctttaga 39484968  T
Q  245 gaattttccactaatatttaac-gtggttcttcattattg 283  Q
    || ||||||| ||||||||||| | ||||||||| |||||    
T  39484967 gatttttccattaatatttaacggaggttcttcaatattg 39484928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 32642015 - 32641905
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagaca 193  Q
    |||||||||||||||| | || || |||| ||| ||||||||| |||||| || ||| |||||||| ||||||||||||||| |||||||| |||||||     
T  32642015 aattacactcacctcccccgaagtctatgtaaatgacactaacccccctt-taattttaaaacttatattaacctcccttaaattctcataaaatagact 32641917  T
Q  194 atcacatccctt 205  Q
    | |||| |||||    
T  32641916 aacacacccctt 32641905  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 12007454 - 12007599
Alignment:
Q  89 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 188  Q
    |||| ||||||||  |||||| ||  ||||||  |||| |||||| ||||||| |||||||| ||||| |||||||||||| |||||||||||||  |||    
T  12007454 gggaaaattacaccaacctcccctatggtttactaaaatgacactgacaccccctctagttttaaaacatacattaacctcacttaagttctcatcaaat 12007553  T
Q  189 agacaatcacatcccttgttttctaagacagttaactttctgttaa 234  Q
    | |||| ||| |||||| ||   ||| ||  |||||||||||||||    
T  12007554 acacaaacacctccctttttcattaacaccattaactttctgttaa 12007599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 50072075 - 50072020
Alignment:
Q  128 gacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 183  Q
    |||||||||||||| | |||||| ||||||||||  ||||||||||||||||||||    
T  50072075 gacactaacaccccctttagttttaaaacttacacaaacctcccttaagttctcat 50072020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 12008005 - 12007919
Alignment:
Q  89 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaa 175  Q
    |||| |||||||| ||||||| || || ||||  |||| |||||| ||||||| |||| ||| |||||||||| |||||||||||||    
T  12008005 gggaaaattacacacacctcccctaagatttactaaaatgacactgacaccccctctaattttaaaacttacactaacctcccttaa 12007919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 32641168 - 32641269
Alignment:
Q  89 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 188  Q
    |||| |||||||| ||||||  |||| || |||| ||| |||||| ||||| | |||| ||| |||| ||||| |||| ||||||||||||||||| |||    
T  32641168 gggataattacacccacctctcctgaagtctatgtaaatgacactgacacctcctctaattttaaaaattacactaacatcccttaagttctcataaaat 32641267  T
Q  189 ag 190  Q
    ||    
T  32641268 ag 32641269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 2487040 - 2486972
Alignment:
Q  89 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaact 157  Q
    |||| ||||||| | |||||| || |||| ||| ||||||||||| |||||||||||||||| ||||||    
T  2487040 gggaaaattacaatgacctccactaaggtctattaaaacgacactgacaccccttctagttttaaaact 2486972  T

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Target: scaffold0119 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 185 - 36
Alignment:
Q  77 ctattagataatgggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaag 176  Q
    ||||||| ||||| || ||||||||||||||||  |||||||||| |||| |||||  ||||||||||||||||||||||| ||  |||||||||| | |    
T  185 ctattagctaatgagaaaattacactcacctcccttgaggtttattaaaatgacac--acaccccttctagtttcaaaactaacggtaacctccctaatg 88  T
Q  177 ttctcatataatagacaatcacatcccttgttttctaagacagttaactttc 228  Q
    |||| ||  ||||||||| ||| |||||| |||  ||| || ||||||||||    
T  87 ttctaatgaaatagacaaacacctcccttctttattaacaccgttaactttc 36  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 26670609 - 26670758
Alignment:
Q  77 ctattagataatgggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaag 176  Q
    ||||||| ||||| || ||||||||||||||||  |||||||||| |||| |||||  ||||||||||||||||||||||| ||  |||||||||| | |    
T  26670609 ctattagctaatgagaaaattacactcacctcccttgaggtttattaaaatgacac--acaccccttctagtttcaaaactaacggtaacctccctaatg 26670706  T
Q  177 ttctcatataatagacaatcacatcccttgttttctaagacagttaactttc 228  Q
    |||| ||  ||||||||| ||| |||||| |||  ||| || ||||||||||    
T  26670707 ttctaatgaaatagacaaacacctcccttctttattaacaccgttaactttc 26670758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 12029351 - 12029412
Alignment:
Q  117 tttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    ||||| |||| |||||||||||||  |||||||||||||   |||||||| |||||||||||    
T  12029351 tttattaaaatgacactaacaccctctctagtttcaaaatgaacattaacatcccttaagtt 12029412  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 41456155 - 41456052
Alignment:
Q  89 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 188  Q
    |||| |||||||||||||||| ||||||| |||||||| |||||| ||| | | |||| |||  ||||||||| ||||||||||||||||||| || |||    
T  41456155 gggataattacactcacctcccctgaggtctatgaaaatgacactgacatctcctctaatttttaaacttacactaacctcccttaagttctcgtaaaat 41456056  T
Q  189 agac 192  Q
    ||||    
T  41456055 agac 41456052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 13231912 - 13231843
Alignment:
Q  114 aggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 183  Q
    |||||||  |||| |||||| ||||||| |||| ||| |||||||||| ||||||||||| |||||||||    
T  13231912 aggtttactaaaatgacactgacaccccctctaattttaaaacttacactaacctccctttagttctcat 13231843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 2623312 - 2623232
Alignment:
Q  114 aggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaa 194  Q
    |||||||| |||| |||||| ||| ||| |||| ||| |||||||||| ||||||||||| |||| ||||  |||||||||    
T  2623312 aggtttattaaaatgacactgacatcccatctaattttaaaacttacactaacctcccttgagttttcatcaaatagacaa 2623232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 7043101 - 7043185
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    |||| ||||||||||| || |||||||| |||| | |||||||||| | |||||||| ||||   | ||||||||||||||||||    
T  7043101 aattgcactcacctcccctaaggtttattaaaatggcactaacaccacctctagttttaaaatgaatattaacctcccttaagtt 7043185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 35595 - 35645
Alignment:
Q  128 gacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    ||||| ||||||| || |||||| ||||||||||||||||| |||||||||    
T  35595 gacacaaacaccctttttagttttaaaacttacattaaccttccttaagtt 35645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 28651687 - 28651768
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaa 175  Q
    ||||||| |||||||| ||||||| ||| |||| |||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  28651687 aattacaatcacctcccctgaggtctattaaaatgacactgacaccccctctatttttaaaacttacattaacctcccttaa 28651768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 27818728 - 27818844
Alignment:
Q  89 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 188  Q
    |||| |||||||||||||||| ||| | |||||||||| |||||||||||||  |||||||| ||||| |||||| || |||||||| || || | ||||    
T  27818728 gggaaaattacactcacctcccctg-gatttatgaaaatgacactaacaccctctctagttttaaaacatacatttacatcccttaaattttcctttaat 27818826  T
Q  189 agacaatcacatcccttg 206  Q
    |||||  ||| |||||||    
T  27818827 agacagacacctcccttg 27818844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 25476167 - 25476083
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    ||||||| |||||||| ||||||||||| |||| |||||| |||| || |||||||| ||||||||||  ||||||||| |||||    
T  25476167 aattacattcacctcccctgaggtttattaaaatgacactgacactccctctagttttaaaacttacacgaacctccctcaagtt 25476083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 48621163 - 48621237
Alignment:
Q  129 acactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatccc 203  Q
    ||||| ||||||| |||||||| |||  ||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  48621163 acactgacaccccctctagttttaaattttacattaatctcccttaagttatcatgtaatagacaaacacatccc 48621237  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 44634145 - 44634034
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagaca 193  Q
    |||| ||||||||||| || | |||||  |||| |||| | ||||||| |||||||| |||||  | |  ||||||||||||||||||||  |||| |||    
T  44634145 aattgcactcacctcccctaaagtttactaaaatgacattgacaccccctctagttttaaaacaaataccaacctcccttaagttctcatcaaatataca 44634046  T
Q  194 atcacatccctt 205  Q
    ||||| ||||||    
T  44634045 atcacctccctt 44634034  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 48621918 - 48621841
Alignment:
Q  128 gacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatccctt 205  Q
    ||||| |||||||| | |||||| ||||| |||| |||||||||||||||| |  | ||||| |||||||| ||||||    
T  48621918 gacaccaacaccccctttagtttaaaaacatacactaacctcccttaagtttttttgtaatacacaatcacctccctt 48621841  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 24154051 - 24153970
Alignment:
Q  97 tacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    ||||||||||||| || |||||||| |||| |||| | | ||||| |||||||| |||||| ||||||||||||||||||||    
T  24154051 tacactcacctcccctaaggtttattaaaatgacagttagaccccctctagttttaaaactaacattaacctcccttaagtt 24153970  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 17115698 - 17115794
Alignment:
Q  87 atgggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 183  Q
    |||||| |||||| ||||||||| ||||| |   |  ||| ||||||||||||   |||||||| ||||||||||  ||||||||||||||||||||    
T  17115698 atgggaaaattactctcacctcctctgagttacgttgaaatgacactaacaccaactctagttttaaaacttacaccaacctcccttaagttctcat 17115794  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 31079831 - 31079720
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagaca 193  Q
    |||| |||| |||||| || |||||||| |||| | ||||||||||   |||||||| ||||   |||||||||||||||| ||| |||   ||||||||    
T  31079831 aattgcacttacctcccctaaggtttattaaaatggcactaacaccttctctagttttaaaatgaacattaacctcccttaggttttcagcaaatagaca 31079732  T
Q  194 atcacatccctt 205  Q
    | ||||||||||    
T  31079731 aacacatccctt 31079720  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 24153192 - 24153308
Alignment:
Q  89 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 188  Q
    |||| |||||||||||||| |  |||||| ||| |||| || ||  ||||||  |||||||| |||| | ||| |||||||||||||||||| ||  |||    
T  24153192 gggaaaattacactcaccttccttgaggtctattaaaatgagacagacacccactctagttttaaaagtaacactaacctcccttaagttctaatgaaat 24153291  T
Q  189 agacaatcacatccctt 205  Q
     ||||| ||| ||||||    
T  24153292 ggacaaacacctccctt 24153308  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 29108111 - 29108166
Alignment:
Q  114 aggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcc 170  Q
    |||||||  |||| |||||||||||||| |||||||| |||||||||| ||||||||    
T  29108111 aggtttacaaaaatgacactaacacccc-tctagttttaaaacttacactaacctcc 29108166  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 45004705 - 45004794
Alignment:
Q  89 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    |||| |||||||||||||||| ||||||||||| |||| | || | ||||||| | |||||| ||| ||||||| |||||||||||||||    
T  45004705 gggaaaattacactcacctcctctgaggtttattaaaatgtcaatgacaccccctttagttttaaatcttacatgaacctcccttaagtt 45004794  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 45146755 - 45146663
Alignment:
Q  113 gaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatccctt 205  Q
    ||||||||| |||| ||||| |||| |||||||| ||| |||||| ||| |||||||||||| ||||| ||  ||||||||| ||| ||||||    
T  45146755 gaggtttattaaaatgacacaaacatcccttctaattttaaaactaacactaacctcccttatgttctaatgaaatagacaaacacctccctt 45146663  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 51489933 - 51489853
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctccctta 174  Q
    |||| ||||||||||| || |||||||| |||| | |||||||||||| |||||||| ||||   | ||||||||||||||    
T  51489933 aattgcactcacctcccctaaggtttattaaaatggcactaacaccccctctagttttaaaatgaatattaacctccctta 51489853  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 50766027 - 50766082
Alignment:
Q  128 gacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 183  Q
    |||||||||||||| |||||||| ||||| |||| ||| |||||||||||| ||||    
T  50766027 gacactaacaccccctctagtttgaaaacctacactaatctcccttaagttttcat 50766082  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 50823970 - 50824059
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 183  Q
    |||||||  |||||||  |||| |||||  ||| |||||||||||||  |||||||| ||||| |||| |||||||| ||||||| ||||    
T  50823970 aattacatccacctcccttgagttttatctaaatgacactaacaccctctctagtttgaaaacctacactaacctcctttaagttttcat 50824059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 50851890 - 50851801
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 183  Q
    |||||||  |||||||  |||| |||||  ||| |||||||||||||  |||||||| ||||| |||| |||||||| ||||||| ||||    
T  50851890 aattacatccacctcccttgagttttatctaaatgacactaacaccctctctagtttgaaaacctacactaacctcctttaagttttcat 50851801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 35744591 - 35744535
Alignment:
Q  117 tttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctccctt 173  Q
    ||||| ||||||||| | ||| ||| |||| |||||||||| |||||||||||||||    
T  35744591 tttattaaaacgacaatgacatcccctctaatttcaaaactaacattaacctccctt 35744535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 45005597 - 45005505
Alignment:
Q  102 tcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaa 194  Q
    ||||||||  |||||||||| |||| ||||||||||   |  ||||||| |||||| ||| | | |||||||||||||||||  |||||||||    
T  45005597 tcacctcccttgaggtttattaaaatgacactaacatttccactagttttaaaactcacactgatctcccttaagttctcatcaaatagacaa 45005505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 24556054 - 24555973
Alignment:
Q  94 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaa 175  Q
    ||||||||| |||||| ||||||||| |  ||||||||| |||||||| |||||||| | ||   |||||||||||||||||    
T  24556054 aattacactaacctcccctgaggtttgttcaaacgacacaaacaccccctctagtttaataatagacattaacctcccttaa 24555973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 35263740 - 35263801
Alignment:
Q  117 tttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 178  Q
    |||||||||| |||| ||||| || ||||| |||  ||||||||||||||||||||||||||    
T  35263740 tttatgaaaatgacattaacatcctttctaattttgaaacttacattaacctcccttaagtt 35263801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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