View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_high_51 (Length: 301)

Name: NF0784_high_51
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_high_51
NF0784_high_51
[»] scaffold0634 (1 HSPs)
scaffold0634 (120-301)||(2975-3156)
[»] chr2 (18 HSPs)
chr2 (88-298)||(26583092-26583313)
chr2 (119-299)||(23089594-23089774)
chr2 (91-299)||(23101994-23102202)
chr2 (127-227)||(23878325-23878425)
chr2 (116-231)||(21907750-21907865)
chr2 (160-299)||(23062988-23063127)
chr2 (85-222)||(5706610-5706759)
chr2 (159-301)||(24660879-24661021)
chr2 (129-231)||(29281368-29281470)
chr2 (170-301)||(26884508-26884639)
chr2 (148-255)||(25181501-25181606)
chr2 (82-180)||(23264515-23264613)
chr2 (129-222)||(9957-10050)
chr2 (192-301)||(23168954-23169063)
chr2 (192-301)||(23580211-23580320)
chr2 (159-231)||(27208322-27208394)
chr2 (159-231)||(27210657-27210729)
chr2 (191-296)||(23264419-23264524)
[»] chr6 (21 HSPs)
chr6 (88-298)||(29614738-29614956)
chr6 (121-299)||(18799754-18799932)
chr6 (119-299)||(21565751-21565931)
chr6 (85-269)||(12167637-12167832)
chr6 (85-269)||(19286546-19286741)
chr6 (116-301)||(25396486-25396671)
chr6 (129-269)||(19877730-19877870)
chr6 (85-269)||(19883506-19883701)
chr6 (148-269)||(19786529-19786650)
chr6 (85-222)||(34640575-34640724)
chr6 (85-222)||(34647249-34647398)
chr6 (127-296)||(19471914-19472082)
chr6 (119-301)||(19300308-19300490)
chr6 (85-180)||(24513370-24513465)
chr6 (129-222)||(20008529-20008622)
chr6 (85-231)||(25470290-25470448)
chr6 (87-209)||(21365067-21365200)
chr6 (87-209)||(23969049-23969182)
chr6 (85-136)||(19786455-19786506)
chr6 (87-136)||(19877874-19877923)
chr6 (191-254)||(9186841-9186903)
[»] scaffold0247 (1 HSPs)
scaffold0247 (85-299)||(10615-10829)
[»] scaffold0026 (2 HSPs)
scaffold0026 (191-301)||(12534-12644)
scaffold0026 (85-180)||(12437-12543)
[»] chr7 (22 HSPs)
chr7 (129-298)||(13742955-13743121)
chr7 (82-299)||(16676628-16676845)
chr7 (82-299)||(17650864-17651081)
chr7 (88-270)||(13123506-13123698)
chr7 (138-270)||(12710496-12710627)
chr7 (85-269)||(13006706-13006901)
chr7 (121-231)||(11389910-11390020)
chr7 (127-205)||(20311631-20311709)
chr7 (160-298)||(46625265-46625403)
chr7 (160-296)||(13678770-13678906)
chr7 (85-220)||(12591230-12591377)
chr7 (139-254)||(11383440-11383554)
chr7 (129-231)||(16090457-16090559)
chr7 (159-231)||(14320243-14320315)
chr7 (116-205)||(21231554-21231643)
chr7 (129-209)||(2464758-2464838)
chr7 (129-209)||(3858007-3858087)
chr7 (87-136)||(3857953-3858003)
chr7 (129-219)||(29181690-29181780)
chr7 (138-186)||(2966383-2966431)
chr7 (88-136)||(12710435-12710483)
chr7 (138-186)||(20907038-20907086)
[»] scaffold0154 (1 HSPs)
scaffold0154 (120-301)||(30202-30383)
[»] scaffold1773 (1 HSPs)
scaffold1773 (129-270)||(452-592)
[»] scaffold0456 (4 HSPs)
scaffold0456 (191-294)||(305-407)
scaffold0456 (191-294)||(7450-7552)
scaffold0456 (85-169)||(409-504)
scaffold0456 (85-169)||(7554-7649)
[»] chr4 (12 HSPs)
chr4 (85-270)||(8046420-8046616)
chr4 (82-205)||(15407485-15407608)
chr4 (119-221)||(14486052-14486154)
chr4 (85-222)||(53483022-53483171)
chr4 (170-255)||(11847453-11847537)
chr4 (129-231)||(16147412-16147514)
chr4 (138-255)||(27905613-27905729)
chr4 (160-252)||(15244566-15244658)
chr4 (259-301)||(14485995-14486037)
chr4 (130-301)||(13887087-13887258)
chr4 (130-301)||(13887944-13888115)
chr4 (160-252)||(15307471-15307563)
[»] scaffold0461 (2 HSPs)
scaffold0461 (82-254)||(581-752)
scaffold0461 (170-254)||(7605-7688)
[»] chr8 (8 HSPs)
chr8 (129-270)||(23865885-23866026)
chr8 (82-205)||(14057148-14057271)
chr8 (82-205)||(25111385-25111508)
chr8 (129-255)||(24321252-24321376)
chr8 (127-296)||(18613529-18613697)
chr8 (135-301)||(21931021-21931187)
chr8 (85-136)||(17054009-17054060)
chr8 (88-136)||(23866030-23866078)
[»] scaffold0004 (2 HSPs)
scaffold0004 (116-301)||(129204-129390)
scaffold0004 (103-296)||(116173-116366)
[»] scaffold0117 (1 HSPs)
scaffold0117 (88-269)||(9167-9358)
[»] scaffold0025 (1 HSPs)
scaffold0025 (88-221)||(14977-15121)
[»] chr3 (13 HSPs)
chr3 (129-269)||(41455741-41455882)
chr3 (91-231)||(55499658-55499798)
chr3 (121-231)||(16802029-16802139)
chr3 (88-221)||(24192274-24192418)
chr3 (140-301)||(13324381-13324542)
chr3 (191-301)||(13302844-13302954)
chr3 (191-301)||(13313520-13313630)
chr3 (129-231)||(14865216-14865319)
chr3 (127-246)||(18914472-18914590)
chr3 (86-135)||(10390034-10390083)
chr3 (86-135)||(10415123-10415172)
chr3 (86-135)||(10421793-10421842)
chr3 (121-186)||(12034007-12034072)
[»] chr1 (10 HSPs)
chr1 (82-254)||(18712098-18712270)
chr1 (129-269)||(41111214-41111354)
chr1 (129-255)||(21710167-21710292)
chr1 (129-255)||(20851714-20851838)
chr1 (129-255)||(21705625-21705749)
chr1 (129-222)||(20858341-20858434)
chr1 (133-301)||(22030333-22030501)
chr1 (170-301)||(19961491-19961622)
chr1 (191-299)||(11157446-11157554)
chr1 (87-136)||(41111358-41111407)
[»] scaffold0138 (1 HSPs)
scaffold0138 (160-301)||(1120-1261)
[»] scaffold0124 (1 HSPs)
scaffold0124 (82-231)||(34861-35010)
[»] chr5 (15 HSPs)
chr5 (85-269)||(23527904-23528099)
chr5 (127-291)||(18408521-18408685)
chr5 (129-209)||(19236294-19236374)
chr5 (121-180)||(22439310-22439369)
chr5 (148-255)||(22460506-22460611)
chr5 (147-255)||(34829432-34829539)
chr5 (129-255)||(22467130-22467254)
chr5 (156-247)||(20781102-20781192)
chr5 (85-135)||(20819639-20819689)
chr5 (85-135)||(20826739-20826789)
chr5 (129-209)||(28889978-28890058)
chr5 (129-209)||(28896682-28896762)
chr5 (129-209)||(28909930-28910010)
chr5 (129-209)||(28931622-28931702)
chr5 (129-209)||(28946325-28946405)
[»] scaffold0235 (2 HSPs)
scaffold0235 (95-254)||(15475-15633)
scaffold0235 (95-231)||(23192-23328)
[»] scaffold0029 (4 HSPs)
scaffold0029 (191-298)||(111178-111284)
scaffold0029 (129-227)||(91783-91881)
scaffold0029 (129-227)||(97509-97607)
scaffold0029 (88-136)||(111330-111378)
[»] scaffold0053 (2 HSPs)
scaffold0053 (160-301)||(81826-81967)
scaffold0053 (129-231)||(80072-80174)
[»] scaffold0310 (1 HSPs)
scaffold0310 (88-205)||(6907-7024)
[»] scaffold0077 (1 HSPs)
scaffold0077 (91-219)||(4153-4281)
[»] scaffold0028 (1 HSPs)
scaffold0028 (116-295)||(65413-65592)
[»] scaffold0222 (1 HSPs)
scaffold0222 (127-291)||(16083-16247)
[»] scaffold0085 (1 HSPs)
scaffold0085 (129-255)||(4253-4377)
[»] scaffold0476 (1 HSPs)
scaffold0476 (127-231)||(3871-3975)
[»] scaffold0090 (1 HSPs)
scaffold0090 (127-278)||(17492-17643)
[»] scaffold0139 (1 HSPs)
scaffold0139 (81-296)||(15521-15735)
[»] scaffold0107 (1 HSPs)
scaffold0107 (82-205)||(41113-41236)
[»] scaffold0031 (2 HSPs)
scaffold0031 (135-301)||(121203-121369)
scaffold0031 (135-301)||(132080-132246)
[»] scaffold0020 (1 HSPs)
scaffold0020 (119-296)||(102489-102666)
[»] scaffold0317 (1 HSPs)
scaffold0317 (160-296)||(663-799)
[»] scaffold0261 (1 HSPs)
scaffold0261 (156-301)||(24178-24323)
[»] scaffold0232 (1 HSPs)
scaffold0232 (197-301)||(19059-19163)
[»] scaffold0034 (1 HSPs)
scaffold0034 (138-255)||(72631-72747)
[»] scaffold0001 (1 HSPs)
scaffold0001 (170-301)||(493650-493781)
[»] scaffold1061 (1 HSPs)
scaffold1061 (191-292)||(1712-1813)
[»] scaffold0094 (1 HSPs)
scaffold0094 (191-296)||(51552-51657)
[»] scaffold0720 (1 HSPs)
scaffold0720 (120-255)||(3831-3966)
[»] scaffold0483 (1 HSPs)
scaffold0483 (170-255)||(11631-11715)
[»] scaffold0206 (1 HSPs)
scaffold0206 (170-231)||(18060-18121)
[»] scaffold0453 (1 HSPs)
scaffold0453 (192-255)||(11196-11258)
[»] scaffold0169 (1 HSPs)
scaffold0169 (260-301)||(6302-6343)
[»] scaffold0023 (2 HSPs)
scaffold0023 (129-186)||(134867-134924)
scaffold0023 (191-255)||(134820-134882)
[»] scaffold0924 (1 HSPs)
scaffold0924 (88-136)||(1343-1391)
[»] scaffold0006 (1 HSPs)
scaffold0006 (88-136)||(49597-49645)


Alignment Details
Target: scaffold0634 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 120 - 301
Target Start/End: Complemental strand, 3156 - 2975
Alignment:
Q  120 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 219  Q
    ||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  3156 gttcgctcaagcgaactgtgagcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcag 3057  T
Q  220 cctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3056 cctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgt 2975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 298
Target Start/End: Complemental strand, 26583313 - 26583092
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 176  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||||||||||||    
T  26583313 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgct 26583214  T
Q  177 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 276  Q
    |||| |||||| | |||||||||||||||| || ||||||||||||  || |||| ||||| |||||||| ||||||||||||||||||||||| ||| |    
T  26583213 taagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggggacttcttgagcattctataatat 26583114  T
Q  277 ttcctttaacttgtataaccct 298  Q
    ||| ||||||| ||||||||||    
T  26583113 ttcttttaactagtataaccct 26583092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 299
Target Start/End: Original strand, 23089594 - 23089774
Alignment:
Q  119 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 218  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  23089594 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 23089693  T
Q  219 gcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttgtataaccctt 299  Q
    ||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| ||||||||||||||||    
T  23089694 gccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttgtataaccctt 23089774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 299
Target Start/End: Original strand, 23101994 - 23102202
Alignment:
Q  91 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 190  Q
    |||||||||||  ||||||||||  |  |||||||| ||||||||| |||||||||||||||||||| | |||||||||| || |||||| |||||        
T  23101994 agcgaaaaaccaatttgattctgccaagagttcgcttaagcgaaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggac 23102093  T
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttg 289  Q
    ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| ||||||    
T  23102094 gtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttg 23102192  T
Q  290 tataaccctt 299  Q
    ||||||||||    
T  23102193 tataaccctt 23102202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 23878425 - 23878325
Alignment:
Q  127 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 225  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||    
T  23878425 caagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactt 23878327  T
Q  226 tt 227  Q
    ||    
T  23878326 tt 23878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 21907865 - 21907750
Alignment:
Q  116 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagcctta 214  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||    
T  21907865 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-cctta 21907767  T
Q  215 gtcagcctctttttgaa 231  Q
    ||||||| |||||||||    
T  21907766 gtcagccactttttgaa 21907750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 299
Target Start/End: Complemental strand, 23063127 - 23062988
Alignment:
Q  160 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 258  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||   |||||||||||| |||||||||  ||||| |||||||  |||||| | |     
T  23063127 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcctt 23063029  T
Q  259 ttgagcattctaaaatgtttcctttaacttgtataaccctt 299  Q
    |||||||||  |||||||||| || ||||||||||||||||    
T  23063028 ttgagcatttaaaaatgtttctttcaacttgtataaccctt 23062988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 5706610 - 5706759
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  5706610 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 5706709  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 222  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  5706710 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 5706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 301
Target Start/End: Complemental strand, 24661021 - 24660879
Alignment:
Q  159 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 257  Q
    |||||| ||||||||||||||| || | | | ||||||||||| |||   | ||||||||||| ||||||||| |||| |||||||||| |||||| | |    
T  24661021 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaa-ttttacttcgtgcactaggggatcct 24660923  T
Q  258 cttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
     ||||||||| ||||||||||| || ||||||||||||| ||||    
T  24660922 tttgagcattttaaaatgtttctttcaacttgtataacctttgt 24660879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 29281470 - 29281368
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  29281470 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctttttct 29281371  T
Q  229 gaa 231  Q
    |||    
T  29281370 gaa 29281368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 26884639 - 26884508
Alignment:
Q  170 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 268  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||||||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  26884639 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctctttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 26884541  T
Q  269 taaaatgtttcctttaacttgtataacccttgt 301  Q
    | ||||||||| |||| |||||||||| |||||    
T  26884540 ttaaatgtttcttttagcttgtataactcttgt 26884508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 25181501 - 25181606
Alignment:
Q  148 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 247  Q
    |||||||||||| |||||||| |||||||||||  ||||| | |||||||||||||| ||||  ||||||||||| ||| |||| | |||||||||||||    
T  25181501 gaacccagacctactgtaagctggtcgcttaagcaaactagccgtcgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcac 25181598  T
Q  248 gaggggac 255  Q
     |||||||    
T  25181599 taggggac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 23264613 - 23264515
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 180  Q
    ||||| || ||||||||| | |||| ||| ||| ||||||||||||||||||||| | |||||||  ||||| |||  |||||||||||||||||||||    
T  23264613 gaacccgtaagcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgttagcgagcgaaaccccgactctctgtaagccggtcgcttaag 23264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 10050 - 9957
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 222  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||| || ||||  |||| ||||||    
T  10050 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcaaactgagtgttagacagcct 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 23168954 - 23169063
Alignment:
Q  192 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 290  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  291 ataacccttgt 301  Q
    |||||||||||    
T  23169053 ataacccttgt 23169063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 23580211 - 23580320
Alignment:
Q  192 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 290  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  291 ataacccttgt 301  Q
    |||||||||||    
T  23580310 ataacccttgt 23580320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 27208322 - 27208394
Alignment:
Q  159 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 231  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27208322 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27208394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 27210657 - 27210729
Alignment:
Q  159 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 231  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27210657 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27210729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 23264524 - 23264419
Alignment:
Q  191 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 288  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| ||| || |||||||| |||||| | | ||||||||| | ||||||| | || |||||    
T  23264524 gtcgcttaagcgaagatga-ccttagtcagccactttttgaacttt-gcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaactt 23264427  T
Q  289 gtataacc 296  Q
    ||||||||    
T  23264426 gtataacc 23264419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 298
Target Start/End: Original strand, 29614738 - 29614956
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 176  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||| ||||||||    
T  29614738 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgct 29614837  T
Q  177 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 276  Q
    |||| |||||| | |||||||||||||||||||||||||||||||   || |||| ||||| |||||||| ||||| ||||||||||||||||| ||| |    
T  29614838 taagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttctgaacttttgtttcgtgcatgagggaacttcttgagcattctataatat 29614934  T
Q  277 ttcctttaacttgtataaccct 298  Q
    ||||||||||| ||||||||||    
T  29614935 ttcctttaactagtataaccct 29614956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 299
Target Start/End: Complemental strand, 18799932 - 18799754
Alignment:
Q  121 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 220  Q
    |||||| ||||||||| ||||||||| |||||||||| | |||||||||||||||||||| |||||| | |||||||||||||||| | |||||||||||    
T  18799932 ttcgcttaagcgaaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagc 18799833  T
Q  221 ctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccctt 299  Q
    | |||||||||  ||||| || ||||  |||||| | | || ||||||| || ||||| | || ||||||||||||||||    
T  18799832 cactttttgaa-ctttgcctcatgcattaggggaccctttttagcattcaaacatgttcctttcaacttgtataaccctt 18799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 299
Target Start/End: Original strand, 21565751 - 21565931
Alignment:
Q  119 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 218  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  21565751 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 21565850  T
Q  219 gcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccctt 299  Q
    ||| |||||||||   |||| |||||||  ||| || | | |||||||||  || ||| |||||| ||||||||||||||||    
T  21565851 gccactttttgaa-cgttgcctcgtgcattaggagacccttttgagcattgaaacatggttccttcaacttgtataaccctt 21565931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 269
Target Start/End: Complemental strand, 12167832 - 12167637
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  12167832 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 12167733  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 269  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  12167732 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 269
Target Start/End: Complemental strand, 19286741 - 19286546
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19286741 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19286642  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 269  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19286641 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 301
Target Start/End: Complemental strand, 25396671 - 25396486
Alignment:
Q  116 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 215  Q
    |||||||| || ||||||||| | ||||||| ||||||  ||  |||||||| |||||||||||| || | | | ||||||||||||||||  | |||||    
T  25396671 agaagttcacttaagcgaaccgttagcgagcggaaccccaactctctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttag 25396572  T
Q  216 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    ||| || ||||||||| || ||||| |||||| |||| | | | ||||||||||||||||||||| || ||||||||||||||||||    
T  25396571 tcaaccactttttgaa-ttatgcttagtgcactagggaatccttttgagcattctaaaatgtttctttcaacttgtataacccttgt 25396486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 19877870 - 19877730
Alignment:
Q  129 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 227  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  19877870 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 19877772  T
Q  228 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 269  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19877771 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 269
Target Start/End: Complemental strand, 19883701 - 19883506
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19883701 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19883602  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 269  Q
    |||||||| |||||| | |||||||||||||||||| ||||| | ||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19883601 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 19786529 - 19786650
Alignment:
Q  148 gaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 246  Q
    ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | ||||||  ||||    
T  19786529 gaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgca 19786627  T
Q  247 cgaggggacttcttgagcattct 269  Q
     ||||||||||||||||| ||||    
T  19786628 tgaggggacttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 34640575 - 34640724
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34640575 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34640674  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 222  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34640675 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 34647249 - 34647398
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34647249 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34647348  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 222  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34647349 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 296
Target Start/End: Original strand, 19471914 - 19472082
Alignment:
Q  127 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 226  Q
    ||||||| || | ||||||| ||||||  || |||||| ||||||||||||||| || | | |  ||||||||||||||   | ||| ||||||| ||||    
T  19471914 caagcgagccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccatcgcttaagcgaagaaggtctt-gtcagccacttt 19472012  T
Q  227 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 296  Q
    ||||||||| ||||||||||| |||||| | | ||||||||| | |||||||||||| |||||||||||||    
T  19472013 ttgaatttt-gcttcgtgcactaggggatccttttgagcattttgaaatgtttccttcaacttgtataacc 19472082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 301
Target Start/End: Original strand, 19300308 - 19300490
Alignment:
Q  119 agttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtc 217  Q
    ||||||||| |||||||| | ||||||| |||| ||| || | ||||| || ||||||||||| || ||| |  ||||||||||||  ||||||||||||    
T  19300308 agttcgctcgagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtc 19300406  T
Q  218 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    ||||||| | ||||  |||||||||||||| |||||| | | ||||| ||| | || |||||| |||| ||||||||||||||||    
T  19300407 agcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtatttttaagtgtttcttttagcttgtataacccttgt 19300490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 24513370 - 24513465
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 180  Q
    ||||| ||||||||| | |||| |||||   ||||||||||||||||||||| | ||||||| ||||||| || |||||| |||||||||||||||    
T  24513370 cctgtaagcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgttagcgagcggaacccaaactttctgtgagccggtcgcttaag 24513465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 20008529 - 20008622
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 222  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | || ||||||||||| ||||  |||| ||||||    
T  20008529 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgttgcttaagcgaactgagtgttagacagcct 20008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 25470290 - 25470448
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||  |||    
T  25470290 cctgtgagcgaaaaaccattttgattctgtccaaaattcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagaacctactgtaagttggt 25470389  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 231  Q
    |||||||| ||||||   |||||||||||||||||| ||||||||||||| ||| ||||    
T  25470390 cgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 25470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 21365067 - 21365200
Alignment:
Q  87 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 175  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  21365067 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 21365166  T
Q  176 ttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||| | |||||||||||||| ||||    
T  21365167 ttaagcgagctagccgtcgcttaagcgaactgag 21365200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 23969049 - 23969182
Alignment:
Q  87 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 175  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  23969049 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 23969148  T
Q  176 ttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||| | |||||||||||||| ||||    
T  23969149 ttaagcgagctagccgtcgcttaagcgaactgag 23969182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 19786455 - 19786506
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 136  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19786455 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19786506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 19877923 - 19877874
Alignment:
Q  87 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 136  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19877923 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19877874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  191 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 254  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 85 - 299
Target Start/End: Complemental strand, 10829 - 10615
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaa 184  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||     
T  10829 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccctaagcgagcagaacccagacttactgtaagccggtcgcttaagcgag 10730  T
Q  185 ctatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttg-agcattctaaaatgtttccttt 283  Q
    ||| | ||||||||||||||||    ||||||||||| |||||||||  ||||| |||||||  ||||||   |||| ||||||  || ||||  | |||    
T  10729 ctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcccttgtagcatttaaacatgtccctttt 10631  T
Q  284 aacttgtataaccctt 299  Q
    ||||||||||||||||    
T  10630 aacttgtataaccctt 10615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 191 - 301
Target Start/End: Original strand, 12534 - 12644
Alignment:
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 290  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgt 12633  T
Q  291 ataacccttgt 301  Q
    ||| |||||||    
T  12634 atatcccttgt 12644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 12437 - 12543
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctca-----------agcgaaccctaagcgagcagaacccagaccttctgtaagccggtc 173  Q
    ||||||||||||||||| |||||||||||| |||||||||||||           |||||||| ||||||||| |||||||||||| |||||||||||||    
T  12437 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 12536  T
Q  174 gcttaag 180  Q
    |||||||    
T  12537 gcttaag 12543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 129 - 298
Target Start/End: Complemental strand, 13743121 - 13742955
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||||| |||||||||||| || ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||   || |    
T  13743121 agcgacccgtaagcgagctgaacccagacctactataagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttct 13743025  T
Q  229 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataaccct 298  Q
    ||| ||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||| ||||||||||    
T  13743024 gaacttttgtttcgtgcatgaggggacttcttgagcattctataatatttcttttaactagtataaccct 13742955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 299
Target Start/End: Complemental strand, 16676845 - 16676628
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 181  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  16676845 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 16676746  T
Q  182 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 280  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  16676745 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 16676647  T
Q  281 tttaacttgtataaccctt 299  Q
    || ||||||||||||||||    
T  16676646 ttcaacttgtataaccctt 16676628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 299
Target Start/End: Complemental strand, 17651081 - 17650864
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 181  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  17651081 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 17650982  T
Q  182 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 280  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  17650981 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 17650883  T
Q  281 tttaacttgtataaccctt 299  Q
    || ||||||||||||||||    
T  17650882 ttcaacttgtataaccctt 17650864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 88 - 270
Target Start/End: Original strand, 13123506 - 13123698
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 176  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  13123506 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 13123605  T
Q  177 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattcta 270  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||||||||||||||||||||    
T  13123606 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattcta 13123698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 270
Target Start/End: Original strand, 12710496 - 12710627
Alignment:
Q  138 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 237  Q
    ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | ||     
T  12710496 taagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactatta 12710594  T
Q  238 cttcgtgcacgaggggacttcttgagcattcta 270  Q
    ||| ||||| |||||||||||||||||||||||    
T  12710595 cttagtgcatgaggggacttcttgagcattcta 12710627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 269
Target Start/End: Complemental strand, 13006901 - 13006706
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  13006901 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 13006802  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 269  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  13006801 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 11389910 - 11390020
Alignment:
Q  121 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcag 219  Q
    |||||||||||||||| ||||||||| |||||||||| | |||| || |||||||||||| || ||| | ||||||||||||||| ||| ||||||||||    
T  11389910 ttcgctcaagcgaaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcag 11390008  T
Q  220 cctctttttgaa 231  Q
    || |||||||||    
T  11390009 ccactttttgaa 11390020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 20311631 - 20311709
Alignment:
Q  127 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 205  Q
    |||||||||| |||||||||||||||||||| | ||| |||||||||||||||| || ||| | |||||||||||||||    
T  20311631 caagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgtcgcttaagcgaag 20311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 46625403 - 46625265
Alignment:
Q  160 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 258  Q
    ||||||||| ||||||||||| || | | | ||||||||||||||||  | ||||||||||| || |||||| ||||| ||||||||| |||| | | |     
T  46625403 tctgtaagcaggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatcctt 46625305  T
Q  259 ttgagcattctaaaatgtttcctttaacttgtataaccct 298  Q
    ||||||||| ||||||||||| || ||||||||| |||||    
T  46625304 ttgagcattttaaaatgtttctttcaacttgtatgaccct 46625265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 296
Target Start/End: Complemental strand, 13678906 - 13678770
Alignment:
Q  160 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 257  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  13678906 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 13678809  T
Q  258 cttgagcattctaaaatgtttcctttaacttgtataacc 296  Q
     |||||||||  |||||||||| || || ||||||||||    
T  13678808 tttgagcattaaaaaatgtttctttcaatttgtataacc 13678770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 12591230 - 12591377
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  12591230 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaaccgtgagcgacccgtaagcgaactgatcccagatcctactgtaagctggt 12591329  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 220  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||    
T  12591330 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 11383440 - 11383554
Alignment:
Q  139 aagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttg 237  Q
    |||||||| |||||||||| | |||| |||| |||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttg 11383537  T
Q  238 cttcgtgcacgagggga 254  Q
    | |||||||| ||||||    
T  11383538 cctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 16090559 - 16090457
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16090559 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16090460  T
Q  229 gaa 231  Q
    |||    
T  16090459 gaa 16090457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 14320243 - 14320315
Alignment:
Q  159 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 231  Q
    |||||| ||||||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  14320243 ttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 14320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 21231554 - 21231643
Alignment:
Q  116 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 205  Q
    ||||||||||||||||||||| | ||||||| ||||||  || |||||| ||| |||||||||||  ||||    |||||||||||||||    
T  21231554 agaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagctggtcgcttaagcaaactggtcgtcgcttaagcgaag 21231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 2464838 - 2464758
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  2464838 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 2464758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 3858007 - 3858087
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  3858007 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 3858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 3857953 - 3858003
Alignment:
Q  87 tgtgagcgaaaaaccgtttt-gattctgttagaagttcgctcaagcgaacc 136  Q
    ||||||||||||||| |||| |||||||||  |||||||||||||||||||    
T  3857953 tgtgagcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaacc 3858003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 29181690 - 29181780
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 219  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||| || ||||  ||||||||    
T  29181690 agcgacccataagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcaaactgagtgttagtcag 29181780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 2966431 - 2966383
Alignment:
Q  138 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 186  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  2966431 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 2966383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 12710435 - 12710483
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 136  Q
    |||||| ||||||| ||||||||||||   |||||||||||||||||||    
T  12710435 gtgagccaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 12710483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 20907038 - 20907086
Alignment:
Q  138 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 186  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  20907038 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 20907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 301
Target Start/End: Complemental strand, 30383 - 30202
Alignment:
Q  120 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 219  Q
    |||| |||||||||||| | |||||||  |||| | || |||||||||||||||||||||| || | | |  ||||||||||||||||||||||||||||    
T  30383 gttcactcaagcgaaccgtgagcgagcgaaacctaaactttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcag 30284  T
Q  220 cctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    || |||| |||| ||||||||||||||| |||||| | | ||||||||||||||||||||| || ||||||||||||||||||    
T  30283 ccactttctgaa-ttttgcttcgtgcactaggggacccttttgagcattctaaaatgtttctttcaacttgtataacccttgt 30202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 270
Target Start/End: Complemental strand, 592 - 452
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||| |    
T  592 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttct 494  T
Q  229 gaatttttgcttcgtgcacgaggggacttcttgagcattcta 270  Q
    ||| | || ||| ||||| |||||||||||||||||||||||    
T  493 gaactattacttagtgcatgaggggacttcttgagcattcta 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 407 - 305
Alignment:
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 290  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 309  T
Q  291 ataa 294  Q
    ||||    
T  308 ataa 305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 7552 - 7450
Alignment:
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 290  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 7454  T
Q  291 ataa 294  Q
    ||||    
T  7453 ataa 7450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 504 - 409
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 169  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 7649 - 7554
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 169  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 7554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 85 - 270
Target Start/End: Original strand, 8046420 - 8046616
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtc 173  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| || ||||  ||||    
T  8046420 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtc 8046519  T
Q  174 gcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattcta 270  Q
    ||||||| || |||   |||||||||||||||||||||||||||||||| ||| |||| | || ||| ||||| |||||||||||||||||||||||    
T  8046520 gcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggggacttcttgagcattcta 8046616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 15407608 - 15407485
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 181  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| ||||| |||| |||||| |||||||||||||||     
T  15407608 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacctagactttctgtgagccggtcgcttaagc 15407509  T
Q  182 gaactatctgtcgcttaagcgaag 205  Q
    |||||  | |||||||||||||||    
T  15407508 gaactggccgtcgcttaagcgaag 15407485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 14486154 - 14486052
Alignment:
Q  119 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 218  Q
    |||||||||||||||||| | ||||||| ||||||| ||  ||||||||||||||||||||| || | | |  |||||||||||||||||||||||||||    
T  14486154 agttcgctcaagcgaaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtca 14486055  T
Q  219 gcc 221  Q
    |||    
T  14486054 gcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 53483171 - 53483022
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  53483171 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 53483072  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 222  Q
    |||||||| |||||  | |||||||||||||||||| |||||||||||||    
T  53483071 cgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct 53483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 11847537 - 11847453
Alignment:
Q  170 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 255  Q
    ||||||||||| |||||| | |||||||||||||  ||||||||||||||||||||| ||||  ||||||| |||||| |||||||    
T  11847537 ggtcgcttaagcgaactacccgtcgcttaagcgagctgagccttagtcagcctctttctgaa-ctttgctttgtgcactaggggac 11847453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 16147412 - 16147514
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16147412 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16147511  T
Q  229 gaa 231  Q
    |||    
T  16147512 gaa 16147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 27905729 - 27905613
Alignment:
Q  138 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 237  Q
    |||||||||| |||||  ||||| ||| ||| | ||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  27905729 taagcgagcaaaaccccaaccttttgtgagctgatcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 27905631  T
Q  238 cttcgtgcacgaggggac 255  Q
    |||||||||  |||||||    
T  27905630 cttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 15244658 - 15244566
Alignment:
Q  160 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 252  Q
    ||||||||||||||||||||| ||   | | ||||||||| |||||   | ||||||||||| ||||||||| ||||||||||||||| ||||    
T  15244658 tctgtaagccggtcgcttaagcgagtcaaccgtcgcttaatcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 14486037 - 14485995
Alignment:
Q  259 ttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    ||||||||||||||||||||| || | ||||||||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgt 14485995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 301
Target Start/End: Complemental strand, 13887258 - 13887087
Alignment:
Q  130 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 229  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13887258 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13887160  T
Q  230 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgt 301  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| ||||    
T  13887159 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgt 13887087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 301
Target Start/End: Complemental strand, 13888115 - 13887944
Alignment:
Q  130 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 229  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13888115 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13888017  T
Q  230 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgt 301  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| ||||    
T  13888016 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgt 13887944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 15307563 - 15307471
Alignment:
Q  160 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 252  Q
    |||||||| |||||||||||| || | | |  ||||||||||||||   | ||||||||||| ||||| |||  |||||||||||||| ||||    
T  15307563 tctgtaagtcggtcgcttaagcgagccagccatcgcttaagcgaagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactaggg 15307471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 581 - 752
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 181  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | |||||||  |||||  || ||||||||||||||||||||||     
T  581 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcgaaaccccaactttctgtaagccggtcgcttaagc 680  T
Q  182 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 254  Q
    |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  681 gaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  170 ggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 254  Q
    ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 270
Target Start/End: Complemental strand, 23866026 - 23865885
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |    
T  23866026 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttct 23865927  T
Q  229 gaatttttgcttcgtgcacgaggggacttcttgagcattcta 270  Q
    ||| | || ||| ||||| |||||||||||||||||||||||    
T  23865926 gaactattacttagtgcatgaggggacttcttgagcattcta 23865885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 14057148 - 14057271
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 181  Q
    ||||| ||||| |||||||| |||||||||||  | ||||||||||||||||||| | ||||||| |||||||||| |||||| |||||||||||||||     
T  14057148 gaacccgtgagtgaaaaaccattttgattctgccataagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagccggtcgcttaagc 14057247  T
Q  182 gaactatctgtcgcttaagcgaag 205  Q
    || ||| | |||||||||||||||    
T  14057248 gagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 25111508 - 25111385
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 181  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| |||||||||| |||||| || ||||||||||||     
T  25111508 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagtcggtcgcttaagc 25111409  T
Q  182 gaactatctgtcgcttaagcgaag 205  Q
    |||||  | |||||||||||||||    
T  25111408 gaactggccgtcgcttaagcgaag 25111385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 255
Target Start/End: Original strand, 24321252 - 24321376
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  24321252 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 24321350  T
Q  229 gaatttttgcttcgtgcacgaggggac 255  Q
    ||| | ||||||||| ||| |||||||    
T  24321351 gaa-tcttgcttcgtacactaggggac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 296
Target Start/End: Complemental strand, 18613697 - 18613529
Alignment:
Q  127 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 225  Q
    |||||||||| | ||||||| ||||||  ||  ||||||||| ||||||||||| |||| | | ||||||||||||||| ||| |||||||| ||| | |    
T  18613697 caagcgaaccgttagcgagcggaaccccaactctctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccac-t 18613600  T
Q  226 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 296  Q
    ||||||  ||||| |||||||| |||||| | |||||||||||  |||||||| | || |||||||||||||    
T  18613599 tttgaa-ctttgcctcgtgcactaggggatcctcttgagcatttaaaaatgttcctttcaacttgtataacc 18613529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 301
Target Start/End: Complemental strand, 21931187 - 21931021
Alignment:
Q  135 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag-tcagcctctttttgaatt 233  Q
    |||| |||||||||||| |  ||  |||||||| ||||||||||||||||| | |  ||||||||||||||   ||||| | |||||| ||||||||  |    
T  21931187 cccttagcgagcagaacaccaactctctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--t 21931090  T
Q  234 tttgcttcgtgcacgagggga--cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    |||||||| | ||| |||| |  | ||| ||||||||||||||||||| || ||||||||||||| ||||    
T  21931089 tttgcttcctccactagggaatccatct-gagcattctaaaatgtttctttcaacttgtataacctttgt 21931021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 17054060 - 17054009
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 136  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  17054060 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 17054009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 23866078 - 23866030
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 136  Q
    |||| ||||||||| ||||||||||||   |||||||||||||||||||    
T  23866078 gtgatcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 23866030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 116 - 301
Target Start/End: Original strand, 129204 - 129390
Alignment:
Q  116 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 215  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||| ||||||||||||||| || | | | |||||||||||||||   | |||||    
T  129204 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttag 129303  T
Q  216 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatgtttcctttaacttgtataacccttgt 301  Q
    |||||| ||||||||| ||||||||||||||| |||||| | | ||||||| || | |||||||||||| ||||||||||||| ||||    
T  129304 tcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcatttttgaaatgtttccttcaacttgtataacctttgt 129390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 296
Target Start/End: Complemental strand, 116366 - 116173
Alignment:
Q  103 ttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg 202  Q
    |||| ||||||| ||||||||||||||||||||| | |||||||  || ||  ||  ||||||||||||||||||||| |||| | | ||||||||||||    
T  116366 ttttcattctgtcagaagttcgctcaagcgaaccgttagcgagcgaaatcccaactctctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcg 116267  T
Q  203 aag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 296  Q
    ||| ||| ||||||||||||  ||||||||  ||||| |||||||| |||||| | | ||||| ||| ||||||||||| || ||| |||||||||    
T  116266 aagatga-ccttagtcagccattttttgaa-ctttgcctcgtgcactaggggatccttttgagtattttaaaatgtttctttcaacctgtataacc 116173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 269
Target Start/End: Original strand, 9167 - 9358
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 176  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  9167 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgct 9266  T
Q  177 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 269  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| | || |||| ||| ||||| ||||||||||||||||||||||    
T  9267 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggggacttcttgagcattct 9358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 14977 - 15121
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 176  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||| | ||||||||||||||||    
T  14977 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgct 15076  T
Q  177 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 221  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  15077 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 269
Target Start/End: Original strand, 41455741 - 41455882
Alignment:
Q  129 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 227  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||||||||||| |||     
T  41455741 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttc 41455840  T
Q  228 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 269  Q
    |||| | |||||| ||||| ||||||||||| ||||| ||||    
T  41455841 tgaactgttgcttagtgcatgaggggacttcctgagcgttct 41455882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 55499658 - 55499798
Alignment:
Q  91 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 190  Q
    |||||||||||  ||||||||||  |  ||||||||||| |||||| ||||||||||||||| |||| | |||||||||||||||||||| ||||||       
T  55499658 agcgaaaaaccaatttgattctgccaagagttcgctcaaacgaaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagac 55499757  T
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaa 231  Q
    ||||||||||||||||    ||||||||||| |||||||||    
T  55499758 gtcgcttaagcgaagttgatcttagtcagccactttttgaa 55499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 16802029 - 16802139
Alignment:
Q  121 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 220  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| || ||| | |||| |||||||||||   ||||||| |||    
T  16802029 ttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagc 16802128  T
Q  221 ctctttttgaa 231  Q
    | |||||||||    
T  16802129 cactttttgaa 16802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 24192418 - 24192274
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcag-----------aacccagaccttctgtaagccggtcgct 176  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||| | |           ||||||||| | ||||||||||||||||    
T  24192418 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgct 24192319  T
Q  177 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 221  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  24192318 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 301
Target Start/End: Original strand, 13324381 - 13324542
Alignment:
Q  140 agcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgct 239  Q
    |||||||| |||||| || ||||| ||||| |||||||||| || | | |  ||||||||||||  |||||||||||||||| |||| |||| |||||||    
T  13324381 agcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgct 13324479  T
Q  240 tcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    |||||||  |||||| | | |||||||||| || ||||||| || | ||| ||||||||||||    
T  13324480 tcgtgcattaggggacccttttgagcattcaaagatgtttctttcagcttatataacccttgt 13324542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 301
Target Start/End: Original strand, 13302844 - 13302954
Alignment:
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 289  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||| || ||||||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  290 tataacccttgt 301  Q
    ||||||||||||    
T  13302943 tataacccttgt 13302954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 301
Target Start/End: Original strand, 13313520 - 13313630
Alignment:
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 289  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||  || ||||||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  290 tataacccttgt 301  Q
    ||||||||||||    
T  13313619 tataacccttgt 13313630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 14865319 - 14865216
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctg-tcgcttaagcgaagtgagccttagtcagcctctttt 227  Q
    ||||| || ||||||| | |||||||||||| || ||||| ||||||||||| |||||| | | ||||||||||||| ||||  ||||||||||| |||     
T  14865319 agcgacccgtaagcgaactgaacccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcgaactgagtgttagtcagcctttttc 14865220  T
Q  228 tgaa 231  Q
    ||||    
T  14865219 tgaa 14865216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 18914590 - 18914472
Alignment:
Q  127 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 225  Q
    |||||||||| | ||||||| ||||||  ||  ||| ||||||||||||||||| ||||   |  |||||||||||||| ||| |||||||||||| | |    
T  18914590 caagcgaacctttagcgagcggaaccccaactctctataagccggtcgcttaagcgaacctgccatcgcttaagcgaagatga-ccttagtcagccac-t 18914493  T
Q  226 tttgaatttttgcttcgtgca 246  Q
    ||||||||||||| |||||||    
T  18914492 tttgaatttttgcctcgtgca 18914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 10390034 - 10390083
Alignment:
Q  86 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 135  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10390034 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10390083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 10415123 - 10415172
Alignment:
Q  86 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 135  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10415123 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10415172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 10421793 - 10421842
Alignment:
Q  86 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 135  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10421793 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10421842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 12034007 - 12034072
Alignment:
Q  121 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 186  Q
    |||||| |||||| || ||||||| |  ||||||||||| |||||||| ||||||||||| |||||    
T  12034007 ttcgcttaagcgacccgtaagcgaactaaacccagacctactgtaagctggtcgcttaagcgaact 12034072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 82 - 254
Target Start/End: Complemental strand, 18712270 - 18712098
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 181  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||| ||||| ||| | ||||||| ||||||  || |||||||||| |||||||||||     
T  18712270 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgcttaagcgtaccgttagcgagcggaaccccaactttctgtaagctggtcgcttaagc 18712171  T
Q  182 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 254  Q
    |||||| | ||||||||||||||| ||| |||||||||||| | ||||||| |||||| |||||||| ||||||    
T  18712170 gaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttttgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 41111354 - 41111214
Alignment:
Q  129 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 227  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  41111354 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 41111256  T
Q  228 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 269  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  41111255 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 255
Target Start/End: Complemental strand, 21710292 - 21710167
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    |||||||| ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| |||      
T  21710292 agcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcctttttcc 21710193  T
Q  229 gaatttttgcttcgtgcacgaggggac 255  Q
    ||| | ||||||||| ||| |||||||    
T  21710192 gaa-tcttgcttcgtacactaggggac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 255
Target Start/End: Original strand, 20851714 - 20851838
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  20851714 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 20851812  T
Q  229 gaatttttgcttcgtgcacgaggggac 255  Q
    ||| | ||||||||| ||| |||||||    
T  20851813 gaa-tcttgcttcgtacactaggggac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 255
Target Start/End: Complemental strand, 21705749 - 21705625
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  21705749 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 21705651  T
Q  229 gaatttttgcttcgtgcacgaggggac 255  Q
    ||| | ||||||||| ||| |||||||    
T  21705650 gaa-tcttgcttcgtacactaggggac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 20858341 - 20858434
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 222  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| ||||||    
T  20858341 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 301
Target Start/End: Original strand, 22030333 - 22030501
Alignment:
Q  133 aaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaat 232  Q
    |||||| |||||||||||| |  ||  |||||||||| |||||||||| || | | |  ||||||||||||||   | ||||||||||| |||||| |||    
T  22030333 aacccttagcgagcagaacaccaactctctgtaagccagtcgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccacttttt-aat 22030431  T
Q  233 ttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    ||||||||| ||||| |||  | | | |||||||||||| |||||||| || ||||||||||||| ||||    
T  22030432 ttttgcttcttgcactaggaaatccttttgagcattctataatgtttctttcaacttgtataacctttgt 22030501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 19961622 - 19961491
Alignment:
Q  170 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 268  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19961622 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19961524  T
Q  269 taaaatgtttcctttaacttgtataacccttgt 301  Q
    | |  |||||| |||| ||||||||||||||||    
T  19961523 ttacgtgtttcttttagcttgtataacccttgt 19961491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 11157554 - 11157446
Alignment:
Q  191 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 288  Q
    ||||||||||||||| ||| ||||||||| || ||||||||| ||| || |||||||  |||||| | | |||||||||  |||||||||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  289 gtataaccctt 299  Q
    |||||||||||    
T  11157456 gtataaccctt 11157446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 41111407 - 41111358
Alignment:
Q  87 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 136  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  41111407 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 41111358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 160 - 301
Target Start/End: Complemental strand, 1261 - 1120
Alignment:
Q  160 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 258  Q
    ||||| ||||||||||||||| || | | | ||||||||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | |     
T  1261 tctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcctt 1163  T
Q  259 ttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    ||||||||| ||||||||||| || ||||||||||||| ||||    
T  1162 ttgagcattttaaaatgtttctttcaacttgtataacctttgt 1120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 34861 - 35010
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 181  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | ||||||| |||||   || ||||||||||||||||||||||     
T  34861 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcggaacctcaactttctgtaagccggtcgcttaagc 34960  T
Q  182 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 231  Q
    |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  34961 gaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 35010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 269
Target Start/End: Complemental strand, 23528099 - 23527904
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 172  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  23528099 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 23528000  T
Q  173 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 269  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  23527999 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 23527904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 18408521 - 18408685
Alignment:
Q  127 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg-aagtgagccttagtcagcctctt 225  Q
    |||||||||| | ||||||| ||||||  || ||||||||||||||||||||||  ||||| | |||||||||||| || ||| |||||||||||| |||    
T  18408521 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcaaactagccgtcgcttaagcgaaaatga-ccttagtcagccactt 18408619  T
Q  226 tttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgta 291  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  18408620 tttgaa-ctttgcctcgtgcactaggggattcttttgagcatttttaaatgttcctttcaacttgta 18408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 19236374 - 19236294
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||    
T  19236374 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgag 19236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 22439310 - 22439369
Alignment:
Q  121 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 180  Q
    |||||| ||| ||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  22439310 ttcgcttaagtgaaccttaagcgagcagaacccagacttactgtaagccggtcgcttaag 22439369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 22460611 - 22460506
Alignment:
Q  148 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 247  Q
    |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| |||    
T  22460611 gaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacac 22460514  T
Q  248 gaggggac 255  Q
     |||||||    
T  22460513 taggggac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 34829539 - 34829432
Alignment:
Q  147 agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 246  Q
    |||||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| ||| ||||  |||||||||||||    
T  34829539 agaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcaacctttttctgaa-ctttgcttcgtgca 34829441  T
Q  247 cgaggggac 255  Q
    | |||||||    
T  34829440 ctaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 255
Target Start/End: Complemental strand, 22467254 - 22467130
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||| ||||| |||||| | |||||||||||| | ||||  |||| |||||| ||| |    
T  22467254 agcgacccataagcgaactgaacccagacctactgtaagctggtcggttaagcgaactagccgtcgcttaagcgtactgagtgttagacagcct-tttct 22467156  T
Q  229 gaatttttgcttcgtgcacgaggggac 255  Q
    ||| | ||||||||| ||| |||||||    
T  22467155 gaa-tcttgcttcgtacactaggggac 22467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 20781192 - 20781102
Alignment:
Q  156 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 247  Q
    ||||| ||| ||| ||||||||||| || ||| | |||||||||||||| | ||  ||||||||||| ||| |||| |||||||||||||||    
T  20781192 accttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactaagtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 20819689 - 20819639
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 135  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20819689 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20819639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 20826789 - 20826739
Alignment:
Q  85 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 135  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20826789 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20826739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 28889978 - 28890058
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28889978 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28890058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 28896682 - 28896762
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28896682 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28896762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 28909930 - 28910010
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28909930 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28910010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 28931622 - 28931702
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28931622 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28931702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 28946325 - 28946405
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 209  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28946325 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 95 - 254
Target Start/End: Original strand, 15475 - 15633
Alignment:
Q  95 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 194  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||| ||||||  || |||||| |||| ||||||||||||| ||| |  |||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagccagtcgcttaagtgagctagccatcg 15574  T
Q  195 cttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 254  Q
    ||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  15575 cttaagcgaagatga-ccttagtcagccactttttgaa-atttgcctcgtgcactagggga 15633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 23192 - 23328
Alignment:
Q  95 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 194  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||  ||||||  || |||||| ||||||| || |||| || ||| | ||||    
T  23192 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagttgaaccccaactttctgtgagccggttgcctaagcgagctagccgtcg 23291  T
Q  195 cttaagcgaag-tgagccttagtcagcctctttttgaa 231  Q
    ||||||||||| ||| |||||||||||| |||||||||    
T  23292 cttaagcgaagatga-ccttagtcagccactttttgaa 23328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 298
Target Start/End: Complemental strand, 111284 - 111178
Alignment:
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 290  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||| | |||||||||| ||    
T  111284 gtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataatttctcctttaactagt 111186  T
Q  291 ataaccct 298  Q
    ||||||||    
T  111185 ataaccct 111178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 91783 - 91881
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 227  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  91783 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 91881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 97509 - 97607
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 227  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  97509 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 97607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 111378 - 111330
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 136  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||||    
T  111378 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 111330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 81826 - 81967
Alignment:
Q  160 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 258  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | ||||||||||| ||||||||| ||||||||||| ||| |||| | | |     
T  81826 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatcctt 81924  T
Q  259 ttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    ||||||||| ||||||||||| || ||||||||||||||||||    
T  81925 ttgagcattttaaaatgtttctttcaacttgtataacccttgt 81967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 80072 - 80174
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  80072 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 80171  T
Q  229 gaa 231  Q
    |||    
T  80172 gaa 80174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 7024 - 6907
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaacta 187  Q
    ||||||||  |||| |||||||||||  || | || ||||||||||| | |||||||||||||||||||| | |||||||||||||||||||| || |||    
T  7024 gtgagcgaggaacctttttgattctgccaggaatttgctcaagcgaatcgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagcta 6925  T
Q  188 tctgtcgcttaagcgaag 205  Q
     | |||||||||||||||    
T  6924 gccgtcgcttaagcgaag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 4153 - 4281
Alignment:
Q  91 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 190  Q
    |||||||||||  ||||||||||  |  |||||||||||||||||| ||| |||||||||||||||| | |||||||| | ||||||||| ||||||       
T  4153 agcgaaaaaccaatttgattctgccaagagttcgctcaagcgaaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagac 4252  T
Q  191 gtcgcttaagcgaagtgagccttagtcag 219  Q
    ||||||||||||||||   ||||||||||    
T  4253 gtcgcttaagcgaagttgaccttagtcag 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 295
Target Start/End: Complemental strand, 65592 - 65413
Alignment:
Q  116 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 215  Q
    ||||||||||| || |||||| | ||||||| ||||||  ||  ||||||||||||||||||||| |||| | | ||| |||||||| ||    ||||||    
T  65592 agaagttcgcttaaccgaaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttag 65493  T
Q  216 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataac 295  Q
    |||||| ||||||||| |||||| |||||||| |||||| | | |||| |||| ||||||||||| || ||||||||||||    
T  65492 tcagccactttttgaa-ttttgcctcgtgcactaggggatccttttgaacattttaaaatgtttctttcaacttgtataac 65413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 16247 - 16083
Alignment:
Q  127 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 225  Q
    |||||||||| | ||||||| ||||||  || |||||||||||||||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||    
T  16247 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactt 16149  T
Q  226 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgta 291  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  16148 tttgaa-ctttgcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaacttgta 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 255
Target Start/End: Original strand, 4253 - 4377
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 228  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| |  ||||||||||||| ||||| ||||||||||| ||| |    
T  4253 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccatcgcttaagcgaactgagcgttagtcagcct-tttct 4351  T
Q  229 gaatttttgcttcgtgcacgaggggac 255  Q
    ||| | ||||||||||||| |||||||    
T  4352 gaa-tcttgcttcgtgcactaggggac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 3871 - 3975
Alignment:
Q  127 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 226  Q
    |||||||||| |||  |||||||||||||||   |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| ||||    
T  3871 caagcgaaccgtaattgagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcagccacttt 3970  T
Q  227 ttgaa 231  Q
    |||||    
T  3971 ttgaa 3975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 278
Target Start/End: Complemental strand, 17643 - 17492
Alignment:
Q  127 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 226  Q
    |||||||||  | |||||||  |||||| || |||||||||||||||||||||| || | | |  |||||||||||||||||||||| ||||||| ||||    
T  17643 caagcgaactgtgagcgagcgaaacccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttggtcagccacttt 17544  T
Q  227 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 278  Q
     |||| ||||| ||||||||| ||| || | | ||||||||||||||| ||||    
T  17543 ctgaa-ttttgtttcgtgcactaggcgagccttttgagcattctaaaaggttt 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 296
Target Start/End: Original strand, 15521 - 15735
Alignment:
Q  81 agaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 180  Q
    |||||| || ||||||||| | |||  ||| ||| ||||||||||||||||||||| | ||||| |  |||||| ||  ||| |||| ||||||||||||    
T  15521 agaacccgtaagcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgttagcgaacgaaacccaaactctctataagacggtcgcttaag 15620  T
Q  181 tgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 278  Q
     |||| | | ||||||||||||||| ||| |||||||||||| ||||| ||| ||| || |||||||| ||| || | | |||||||||  |||||||||    
T  15621 cgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccactttt-gaacttt-gcctcgtgcactaggagatccttttgagcatttaaaaatgttt 15717  T
Q  279 cctttaacttgtataacc 296  Q
    | || |||||||||||||    
T  15718 ctttcaacttgtataacc 15735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 41113 - 41236
Alignment:
Q  82 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 181  Q
    ||||| || ||| ||||||| |||  |||||| | |||||||||||||||||||  | ||||||| ||||||  ||||||||| ||||| |||||||||     
T  41113 gaacccgtaagcaaaaaaccatttacattctgcttgaagttcgctcaagcgaactgtcagcgagcggaaccccaaccttctgtgagccgatcgcttaagc 41212  T
Q  182 gaactatctgtcgcttaagcgaag 205  Q
    ||||||   |||||||||||||||    
T  41213 gaactagacgtcgcttaagcgaag 41236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 301
Target Start/End: Complemental strand, 121369 - 121203
Alignment:
Q  135 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 234  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  121369 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 121270  T
Q  235 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| ||||    
T  121269 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgt 121203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 301
Target Start/End: Complemental strand, 132246 - 132080
Alignment:
Q  135 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 234  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  132246 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 132147  T
Q  235 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| ||||    
T  132146 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgt 132080  T

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Target: scaffold0020 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 296
Target Start/End: Original strand, 102489 - 102666
Alignment:
Q  119 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtc 217  Q
    |||||||||||||||||| | ||||||| ||||||  || ||||||||| |||||||||||| |||| | |  |||||||||||||| ||| ||||||||    
T  102489 agttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatga-ccttagtc 102587  T
Q  218 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 296  Q
     ||| |||||||||   |||| |||||||| |||||| | | ||||| ||| ||||| ||||| || ||| |||||||||    
T  102588 ggccactttttgaa-ccttgcctcgtgcactaggggatccttttgagtattttaaaaggtttctttcaacctgtataacc 102666  T

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Target: scaffold0317 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 296
Target Start/End: Complemental strand, 799 - 663
Alignment:
Q  160 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 257  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  799 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 702  T
Q  258 cttgagcattctaaaatgtttcctttaacttgtataacc 296  Q
     |||||||||  |||||||||| || || ||||||||||    
T  701 tttgagcattaaaaaatgtttctttcaatttgtataacc 663  T

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Target: scaffold0261 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 301
Target Start/End: Original strand, 24178 - 24323
Alignment:
Q  156 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 254  Q
    ||||| ||| ||| ||||||||||| || |||||  ||||||||||||  |||||||||||||| |||||| ||||  |||||||||||||| ||||||     
T  24178 accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaa-ctttgcttcgtgcactaggggac 24276  T
Q  255 cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    | | |||||  || | || |||||| |||| ||||||||||||||||    
T  24277 ccttttgagtgtttttaagtgtttcttttagcttgtataacccttgt 24323  T

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Target: scaffold0232 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 301
Target Start/End: Original strand, 19059 - 19163
Alignment:
Q  197 taagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataac 295  Q
    ||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | | ||||||||| ||||||||||| || ||||| ||||||    
T  19059 taagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataac 19157  T
Q  296 ccttgt 301  Q
    | ||||    
T  19158 ctttgt 19163  T

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Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 72747 - 72631
Alignment:
Q  138 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 237  Q
    |||||||||| |||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  72747 taagcgagcaaaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 72649  T
Q  238 cttcgtgcacgaggggac 255  Q
    |||||||||  |||||||    
T  72648 cttcgtgcattaggggac 72631  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 493650 - 493781
Alignment:
Q  170 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 268  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  493650 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 493748  T
Q  269 taaaatgtttcctttaacttgtataacccttgt 301  Q
    | ||||||||| |||| |||||||||| |||||    
T  493749 ttaaatgtttcttttagcttgtataactcttgt 493781  T

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Target: scaffold1061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 1813 - 1712
Alignment:
Q  191 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 288  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||| |||||| | | ||||||||| ||||||||||| || |||||    
T  1813 gtcgcttaagcgaagatga-ccttagtcagccactttttgaatttt-gcctcgtgcactaggggatccttttgagcattttaaaatgtttctttcaactt 1716  T
Q  289 gtat 292  Q
    ||||    
T  1715 gtat 1712  T

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Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 51657 - 51552
Alignment:
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 289  Q
    |||||||||||||||   | ||||||||||| ||||||||||||| |||| |||||| |||| | | | ||||||||| ||||||||||| || ||||||    
T  51657 gtcgcttaagcgaagaaggtcttagtcagccactttttgaatttt-gctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttg 51559  T
Q  290 tataacc 296  Q
    |||||||    
T  51558 tataacc 51552  T

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Target: scaffold0720 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 255
Target Start/End: Original strand, 3831 - 3966
Alignment:
Q  120 gttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 218  Q
    ||||||||||||||||| | ||||||| || |||   || || ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||| |||||||    
T  3831 gttcgctcaagcgaaccgtgagcgagcgaggacctcaactttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtca 3930  T
Q  219 gcctctttttgaatttttgcttcgtgcacgaggggac 255  Q
    |||| ||||||||   ||||||||||||| |||||||    
T  3931 gcctttttttgaa-ccttgcttcgtgcactaggggac 3966  T

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Target: scaffold0483 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 11631 - 11715
Alignment:
Q  170 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 255  Q
    ||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||| ||||| |||||||    
T  11631 ggtcgcttaagcgaactacccttcgcttaagcgagctgagccttagtcagcctctatctgaa-ctttgcttcatgcactaggggac 11715  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 18121 - 18060
Alignment:
Q  170 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 231  Q
    ||||||||||| || ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaa 18060  T

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Target: scaffold0453 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 11196 - 11258
Alignment:
Q  192 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 255  Q
    ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||||    
T  11196 tcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggac 11258  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 6343 - 6302
Alignment:
Q  260 tgagcattctaaaatgtttcctttaacttgtataacccttgt 301  Q
    |||||||||||||||||||| || ||||||||||||| ||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgt 6302  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 134924 - 134867
Alignment:
Q  129 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 186  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  134924 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 134867  T

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Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 134882 - 134820
Alignment:
Q  191 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 255  Q
    |||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  134882 gtcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 134820  T

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Target: scaffold0924 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 1343 - 1391
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 136  Q
    |||||||||||||  ||||||||||||   |||||||||||||||||||    
T  1343 gtgagcgaaaaacaattttgattctgtccaaagttcgctcaagcgaacc 1391  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 49645 - 49597
Alignment:
Q  88 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 136  Q
    |||||||||||||| ||||||||||||   |||||||||||| ||||||    
T  49645 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaacc 49597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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