View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_high_55 (Length: 290)
Name: NF0784_high_55
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 934519 - 934277
Alignment:
| Q |
20 |
tagtaattgaaaataaggattgatgaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttataggaagggaatagttt-tagat |
118 |
Q |
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| T |
934519 |
tagtaattgaagataaagattgaggaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttataggaagggaatagtttctagat |
934420 |
T |
|
| Q |
119 |
atttgtcggttgtatgcttgaatttcaactggctaccaaatttgacacacttttaataacttcaactgcctgtggtatgtcacattaatttcatttgtat |
218 |
Q |
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| T |
934419 |
atttgtcggttgtatgcttgaatttcaactggctaccaaatttgacacacttttaataacttcaactgcctgtggtatgtcacattaattgcatttgtat |
934320 |
T |
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| Q |
219 |
ttggacggttggtacttggcagagagattcagagagtgtacaa |
261 |
Q |
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| T |
934319 |
ttggacggttggtacttggcagagagattcagagagtgtacaa |
934277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 900830 - 900775
Alignment:
| Q |
44 |
gaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttatag |
99 |
Q |
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| T |
900830 |
gaactgaaaacaagatagaatgaagatccctaagtggccttacacatcatttatag |
900775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 908665 - 908606
Alignment:
| Q |
39 |
ttgatgaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttata |
98 |
Q |
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| T |
908665 |
ttgaggaactgtaagcaagatagaatgaagacccgtaactggactcacacaccatttata |
908606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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