View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_high_56 (Length: 288)
Name: NF0784_high_56
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 15302717 - 15302462
Alignment:
| Q |
5 |
caaacatctctcaccaaaattgtaatatacaactccttgtttaaaaatgtatcacaagacatgttttggagtttggcatcacattgtgtatttctttgtt |
104 |
Q |
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| T |
15302717 |
caaacatctctcaccaaaattgaaatatacaactccttgtttaaaaatgtatcacaagacatgttttggagtttggcatcacattgtgtatttctttttt |
15302618 |
T |
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| Q |
105 |
tagagaataatgacatgccttggaacatgtcaaatgtgttgttgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgact |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15302617 |
tagagaataatgacatgccttggaacatgtcaaatgtgttgctgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgact |
15302518 |
T |
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| Q |
205 |
aacttcaaatgtgagtgtttttgagatagcctataacaatttgactggatctcttt |
260 |
Q |
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| T |
15302517 |
aacttcaaatgtgagtgtttttgagatagcctataacaatttgactggatctcttt |
15302462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 15483086 - 15482831
Alignment:
| Q |
5 |
caaacatctctcaccaaaattgtaatatacaactccttgtttaaaaatgtatcacaagacatgttttggagtttggcatcacattgtgtatttctttgtt |
104 |
Q |
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| T |
15483086 |
caaacatctctcaccaaaattgaaatatacaactccttgtttaaaaatgtatcacaagacatgttttggagtttggcatcacattgtgtatttctttttt |
15482987 |
T |
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| Q |
105 |
tagagaataatgacatgccttggaacatgtcaaatgtgttgttgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgact |
204 |
Q |
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| T |
15482986 |
tagagaataatgacatgccttggaacatgtcaaatgtgttgctgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgact |
15482887 |
T |
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| Q |
205 |
aacttcaaatgtgagtgtttttgagatagcctataacaatttgactggatctcttt |
260 |
Q |
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| T |
15482886 |
aacttcaaatgtgagtgtttttgagatagcctataacaatttgactggatctcttt |
15482831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 15446434 - 15446244
Alignment:
| Q |
35 |
aactccttgtttaaaaatgtatcacaagacatgttttggagtttggcatcacattgtgtatttctttgtttagagaataatgacatgccttggaacatgt |
134 |
Q |
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| T |
15446434 |
aactccatgtttaaagatgtatctcaagacaagttttggagtttggcatctcattgttggtttctttctttataccacaataacatgccttggaacatgt |
15446335 |
T |
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| Q |
135 |
caaatgtgttgttgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgactaacttcaaatgtgagtgtttt |
225 |
Q |
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| T |
15446334 |
caaatgtgttgttaaattctgaagttgcatggttggttgataatggtttgagtggtggccttcctcaattaacttcaaatgtgagtgtttt |
15446244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 15313544 - 15313362
Alignment:
| Q |
43 |
gtttaaaaatgtatcacaagacatgttttggagtttggcatcacattgtgtatttctttgtttagagaataatgacatgccttggaacatgtcaaatgtg |
142 |
Q |
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| T |
15313544 |
gtttaaagatgtatctcaggacaagttttggagtttggcatctcattgtttgtttctttctttattccacaataacatgccttggaacatgtcaaatgtg |
15313445 |
T |
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| Q |
143 |
ttgttgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgactaacttcaaatgtgagtgtttt |
225 |
Q |
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| T |
15313444 |
ttgttaaattctaaagttacatggttgattgataatggtttgagtggtggccttcctcaattaacttcaaatgtgagtgtttt |
15313362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 15493913 - 15493731
Alignment:
| Q |
43 |
gtttaaaaatgtatcacaagacatgttttggagtttggcatcacattgtgtatttctttgtttagagaataatgacatgccttggaacatgtcaaatgtg |
142 |
Q |
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||||||| ||||||| || |||| |||||||||||||||||| |||||| | ||||||| |||| | ||| |||||||||||||||||||||||||| |
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| T |
15493913 |
gtttaaagatgtatctcaggacaagttttggagtttggcatctcattgtttgtttctttctttattccacaataacatgccttggaacatgtcaaatgtg |
15493814 |
T |
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| Q |
143 |
ttgttgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgactaacttcaaatgtgagtgtttt |
225 |
Q |
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| T |
15493813 |
ttgttaaattctaaagttacatggttgattgataatggtttgagtggtggccttcctcaattaacttcaaatgtgagtgtttt |
15493731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 15297846 - 15297747
Alignment:
| Q |
118 |
catgccttggaacatgtcaaatgtgttgttgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgactaacttcaaatgtg |
217 |
Q |
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| T |
15297846 |
catgcattggaacatgtgaaatgtgttgttgaactctgaaattgtatggctggttgttaatggtttaagtggtagccttcctcgattaacttcaaatgtg |
15297747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 15478215 - 15478116
Alignment:
| Q |
118 |
catgccttggaacatgtcaaatgtgttgttgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgactaacttcaaatgtg |
217 |
Q |
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| T |
15478215 |
catgcattggaacatgtgaaatgtgttgttgaactctgaaattgtatggctggttgttaatggtttaagtggtagccttcctcgattaacttcaaatgtg |
15478116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 15284089 - 15283993
Alignment:
| Q |
130 |
catgtcaaatgtgttgttgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgactaacttcaaatgtgagtgttttt |
226 |
Q |
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||||||||||||||||||||||||||| |||||||| | | || |||||||||||| ||||||||||| ||||| ||||||||||| ||||| |
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| T |
15284089 |
catgtcaaatgtgttgttgaactctgattttgtatggttagtccataatggtttgagtggtagccttcctcgattaactacaaatgtgagtattttt |
15283993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 15464458 - 15464362
Alignment:
| Q |
130 |
catgtcaaatgtgttgttgaactctgaaattgtatggctgattggaaacggtttgagtggtggccttcctcgactaacttcaaatgtgagtgttttt |
226 |
Q |
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||||||||||||||||||||||||||| |||||||| | | || |||||||||||| ||||||||||| ||||| ||||||||||| ||||| |
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| T |
15464458 |
catgtcaaatgtgttgttgaactctgattttgtatggttagtccataatggtttgagtggtagccttcctcgattaactacaaatgtgagtattttt |
15464362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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