View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_high_67 (Length: 267)
Name: NF0784_high_67
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 9789543 - 9789426
Alignment:
| Q |
122 |
aatcatgttatcaaattagtattctatgcacttctgttttcnnnnnnngtttgttattcaatcaataccatacttttttatgcttttgtgattgcaagtt |
221 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9789543 |
aatcatgttatcaaattaatattctatgcacttctgttttctttttttgtttgttattcaatcaataccatacttttttatgcttttgtgattgcaagtt |
9789444 |
T |
|
| Q |
222 |
gcatgttcctttattcat |
239 |
Q |
| |
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|||||||||||||||||| |
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| T |
9789443 |
gcatgttcctttattcat |
9789426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 3586922 - 3587039
Alignment:
| Q |
122 |
aatcatgttatcaaattagtattctatgcacttctgttttcnnnnnnngtttgttattcaatcaataccatacttttttatgcttttgtgattgcaagtt |
221 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3586922 |
aatcatgttatcaaatcagtattctatgcacttttgttttctttttttgtttgttattcaatcaataccatacttttttatgcttttgtgattgcaagtt |
3587021 |
T |
|
| Q |
222 |
gcatgttcctttattcat |
239 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3587022 |
gcatgttcctttattcat |
3587039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 9789639 - 9789578
Alignment:
| Q |
26 |
cctagctgttgctgttgtcagacttttcagatctgcaggtactatttttcactgcatctatt |
87 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9789639 |
cctagctgctgctgttgtcagacttttcagatctacaggtactatttttcactgcatctatt |
9789578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 3586826 - 3586887
Alignment:
| Q |
26 |
cctagctgttgctgttgtcagacttttcagatctgcaggtactatttttcactgcatctatt |
87 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
3586826 |
cctagctgctgctgttgtcagacttttcagatctgcaggtactattttttaccgcatctatt |
3586887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 10014329 - 10014212
Alignment:
| Q |
122 |
aatcatgttatcaaattagtattctatgcacttctgttttcnnnnnnngtttgttattcaatcaataccatacttttttatgcttttgtgattgcaagtt |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
10014329 |
aatcatgttatcaaatcagtattctatgtacttctgttttctttttttgtttgttattcaatcaatatcatactttattatgcttttgtgattgcaagtt |
10014230 |
T |
|
| Q |
222 |
gcatgttcctttattcat |
239 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
10014229 |
gcatgttcctttattcat |
10014212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 10021470 - 10021353
Alignment:
| Q |
122 |
aatcatgttatcaaattagtattctatgcacttctgttttcnnnnnnngtttgttattcaatcaataccatacttttttatgcttttgtgattgcaagtt |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
10021470 |
aatcatgttatcaaatcagtattctatgtacttctgttttctttttttgtttgttattcaatcaatatcatactttattatgcttttgtgattgcaagtt |
10021371 |
T |
|
| Q |
222 |
gcatgttcctttattcat |
239 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
10021370 |
gcatgttcctttattcat |
10021353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 31678654 - 31678753
Alignment:
| Q |
122 |
aatcatgttatcaaattagtattctat--gcacttctgttttcnnnnnnngtttgttattcaatcaataccatacttttttatgcttttgtgattgcaag |
219 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
31678654 |
aatcatgttatcaaatcagtattctatatgcacttctgttttttttttt--tttgttattcaatcaataccatac-tttttatgcttttgtgattgcaag |
31678750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 31678558 - 31678619
Alignment:
| Q |
26 |
cctagctgttgctgttgtcagacttttcagatctgcaggtactatttttcactgcatctatt |
87 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |
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| T |
31678558 |
cctagctgctgctgttgtcagacttttcagatctacaggtacgatttttcaccgcatctatt |
31678619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 44504770 - 44504887
Alignment:
| Q |
122 |
aatcatgttatcaaattagtattctatgcacttctgttttcnnnnnnngtttgttattcaatcaataccatacttttttatgcttttgtgattgcaagtt |
221 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
44504770 |
aatcatgttatcaaatcggtattctatgcacttcggttttctttttttgtttgttattcaattaaaaccatacttttttatgcttttgtgattgcaagtt |
44504869 |
T |
|
| Q |
222 |
gcatgttcctttattcat |
239 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
44504870 |
gcatgttcctttattcat |
44504887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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