View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0784_high_77 (Length: 252)
Name: NF0784_high_77
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_high_77 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 52767796 - 52767600
Alignment:
| Q |
30 |
gtctggaggattatgcttgacgaaattccatataatgataagctaaaagagagaggttgtaatctgccttcagtctgcaatctgtgtcggtgccatgagg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52767796 |
gtctggaggattatgcttgacgaaattccatataatgataagctaaaagagagaggttgtaatctgccttcagtctgcaatctgtgtcggtgccatgagg |
52767697 |
T |
|
| Q |
130 |
aaattattccatttatactttgtctgctcatatgcagtccatatttggcgttggccatggttttccttggttcttaattcaacattgcatttctcat |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52767696 |
aaattattccatttatactttgtctgctcatatgcagtccatatttggcgttggccatggttttccttggttcttaattcaacattgcatttctcat |
52767600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7169 times since January 2019
Visitors: 5775