View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_high_80 (Length: 251)

Name: NF0784_high_80
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_high_80
NF0784_high_80
[»] chr6 (11 HSPs)
chr6 (17-251)||(5690730-5690963)
chr6 (137-243)||(5176071-5176177)
chr6 (137-243)||(5277898-5278004)
chr6 (106-243)||(5074422-5074559)
chr6 (118-235)||(5147617-5147734)
chr6 (130-243)||(5396266-5396379)
chr6 (130-243)||(5432617-5432730)
chr6 (137-243)||(5182619-5182725)
chr6 (118-217)||(5342866-5342965)
chr6 (140-210)||(5382854-5382924)
chr6 (106-235)||(5095252-5095381)
[»] chr7 (1 HSPs)
chr7 (130-243)||(36214563-36214676)
[»] scaffold0294 (1 HSPs)
scaffold0294 (140-243)||(9385-9488)
[»] chr4 (7 HSPs)
chr4 (137-212)||(4321728-4321803)
chr4 (137-212)||(4359693-4359768)
chr4 (130-212)||(4125127-4125209)
chr4 (130-212)||(4352516-4352598)
chr4 (121-212)||(4334779-4334870)
chr4 (138-212)||(4344237-4344311)
chr4 (141-243)||(4134524-4134626)
[»] chr5 (1 HSPs)
chr5 (118-243)||(8877066-8877191)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 5690730 - 5690963
Alignment:
Q  17 ttaattttaattcatgcttagtgtaaaacttatttacactatcatctaaacaaccgattgccgaattcctttgattatgtcaaaatcattacctgtgcct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5690730 ttaattttaattcatgcttagtgtaaaacttatttacactatcatctaat-aaccgattgccgaattcctttgattatgtcaaaatcattacctgtgcct 5690828  T
Q  117 ttttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatccca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5690829 ttttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatccca 5690928  T
Q  217 agaaaaccatctcagattttttgaaagtttatcaa 251  Q
    |||||||||||||||||||||||||||||||||||    
T  5690929 agaaaaccatctcagattttttgaaagtttatcaa 5690963  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 5176177 - 5176071
Alignment:
Q  137 ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagatttt 236  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||| |||||||||||||     
T  5176177 ttgctgttttctaactcgatggaaactaaatttccttgataaaagcttgaaggaatgcatgataaaggaaatccattccaagaaagccatctcagatttc 5176078  T
Q  237 ttgaaag 243  Q
    |||||||    
T  5176077 ttgaaag 5176071  T

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Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 5278004 - 5277898
Alignment:
Q  137 ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagatttt 236  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||| |||||||||||||     
T  5278004 ttgctgttttctaactcgatggaaactaaatttccttgataaaagcttgaaggaatgcatgataaaggaaatccattccaagaaagccatctcagatttc 5277905  T
Q  237 ttgaaag 243  Q
    |||||||    
T  5277904 ttgaaag 5277898  T

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Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 5074422 - 5074559
Alignment:
Q  106 tacctgtgcctttttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaagga 205  Q
    |||||| | ||||||||| | || |||||  ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  5074422 tacctgggtctttttccacacaagtttgatattgctgtttactaactcaatggaaactaaatttccttgataaaagcttgaaggaatgcatgttaaagga 5074521  T
Q  206 aatccatcccaagaaaaccatctcagattttttgaaag 243  Q
    ||||||| ||| |||| |||||||| |||| |||||||    
T  5074522 aatccattccatgaaagccatctcaaatttcttgaaag 5074559  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 5147617 - 5147734
Alignment:
Q  118 tttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaa 217  Q
    |||||| |||| |||||  ||||| ||||||||||||| |||||||||||||||| ||||||||||||  || ||| |||||| ||||||||||| ||||    
T  5147617 tttccacagaagtttgatattgctattttctaactcaatggaaactaaatttcctagataaaagcttgtgggtatgcatgttagaggaaatccattccaa 5147716  T
Q  218 gaaaaccatctcagattt 235  Q
    |||| |||||||||||||    
T  5147717 gaaagccatctcagattt 5147734  T

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Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 5396379 - 5396266
Alignment:
Q  130 tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctc 229  Q
    |||||| ||||||||| ||||||||| |||||||||||| || ||||||||||||||||| ||| || ||||||||||| ||| |||||||| |||||||    
T  5396379 tttgacattgctgtttactaactcaatggaaactaaattcccctgataaaagcttgaaggaatgcattttaaaggaaatgcattccaagaaagccatctc 5396280  T
Q  230 agattttttgaaag 243  Q
    | |||| |||||||    
T  5396279 acatttcttgaaag 5396266  T

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Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 5432730 - 5432617
Alignment:
Q  130 tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctc 229  Q
    |||||| || |||||||||||||| | ||||||||||||| ||||||||||| ||| ||| ||| ||| ||| |||||||||| |||||||| |||||||    
T  5432730 tttgacattactgttttctaactcgatggaaactaaatttgcttgataaaagtttgtaggtatgcatgataacggaaatccattccaagaaagccatctc 5432631  T
Q  230 agattttttgaaag 243  Q
    |||||| |||||||    
T  5432630 agatttcttgaaag 5432617  T

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Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 5182619 - 5182725
Alignment:
Q  137 ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagatttt 236  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||| || ||||| ||| || | ||||||||||||| |||||||| |||| ||||||||     
T  5182619 ttgctgtttactaactcaatggaaactaaattttcttgataaaaactcgaaggaatgcatttcaaaggaaatccattccaagaaagccatatcagatttc 5182718  T
Q  237 ttgaaag 243  Q
    |||||||    
T  5182719 ttgaaag 5182725  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 5342965 - 5342866
Alignment:
Q  118 tttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaa 217  Q
    |||||| |||| ||||||  |||||||||| ||||| | |||||||||||||||||||| |||| ||  ||| ||| || ||||||||||||||| ||||    
T  5342965 tttccacagaagtttgacactgctgttttcaaactccatggaaactaaatttccttgatcaaagtttttaggtatgcatcttaaaggaaatccattccaa 5342866  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 5382924 - 5382854
Alignment:
Q  140 ctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatcc 210  Q
    |||||||||||||| | |||||||||||||| |||| ||||| ||||||| ||| ||| ||||||||||||    
T  5382924 ctgttttctaactctatggaaactaaatttctttgacaaaagtttgaaggtatgaatgataaaggaaatcc 5382854  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 235
Target Start/End: Complemental strand, 5095381 - 5095252
Alignment:
Q  106 tacctgtgcctttttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaagga 205  Q
    |||||| |||| |||||||| || |||||| ||||| || |||||||| | |||||| ||  ||||||  |||||| ||| ||| ||   |||||||| |    
T  5095381 tacctgggcctctttccataaaagtttgacattgctattctctaactcgatggaaaccaagcttcctttgtaaaagtttgtaggtatatgtgttaaagaa 5095282  T
Q  206 aatccatcccaagaaaaccatctcagattt 235  Q
    ||||||| |||||| | |||||||||||||    
T  5095281 aatccattccaagacagccatctcagattt 5095252  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 36214563 - 36214676
Alignment:
Q  130 tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctc 229  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||| |||||||| |||||||    
T  36214563 tttgacattgctgttttctaactcaatggaaactaaattttcttgataaaagcttgaaggaatgcatgttaaaggaaaaccattccaagaaagccatctc 36214662  T
Q  230 agattttttgaaag 243  Q
    | ||||||||||||    
T  36214663 aaattttttgaaag 36214676  T

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Target: scaffold0294 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 9385 - 9488
Alignment:
Q  140 ctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagattttttg 239  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||||| ||| ||| |||||||||||| | |||| | | |||||| || ||| |||    
T  9385 ctgttttctaactcaatggaaactaaatttctttgataaaagtttgaaggtatgaatggtaaaggaaatcctttccaacacagccatcttagttttcttg 9484  T
Q  240 aaag 243  Q
    ||||    
T  9485 aaag 9488  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 4321728 - 4321803
Alignment:
Q  137 ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccat 212  Q
    ||||||||||||||||||| |||||||| ||||| |||||| ||| ||||||| ||| || |||||||||||||||    
T  4321728 ttgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatcttaaaggaaatccat 4321803  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 4359768 - 4359693
Alignment:
Q  137 ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccat 212  Q
    ||||||||||||||| ||| |||||||||||||| |||||| ||| |||| || ||| ||||||||||||||||||    
T  4359768 ttgctgttttctaacacaatggaaactaaatttctttgatagaagtttgacggtatgcatgttaaaggaaatccat 4359693  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 4125127 - 4125209
Alignment:
Q  130 tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccat 212  Q
    |||||| ||||| ||||||||||||| |||||| | ||||| |||||| ||| ||||||| ||| ||||||||||||||||||    
T  4125127 tttgacattgctattttctaactcaatggaaacaatatttctttgatagaagtttgaaggtatgcatgttaaaggaaatccat 4125209  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 4352598 - 4352516
Alignment:
Q  130 tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccat 212  Q
    |||||| ||||||||||||||| ||| |||||||||||||| |||||| ||| ||||||  ||  ||||||||||||||||||    
T  4352598 tttgacattgctgttttctaacacaacggaaactaaatttctttgatagaagtttgaagctatacatgttaaaggaaatccat 4352516  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 4334870 - 4334779
Alignment:
Q  121 ccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccat 212  Q
    ||||| || |||||| ||||||||||||||||||| |||||||| ||||| ||||   ||  ||||||| ||| ||||||||||||||||||    
T  4334870 ccatacaagtttgacattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccat 4334779  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 4344311 - 4344237
Alignment:
Q  138 tgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccat 212  Q
    |||||||||||||||||| |||||||| ||||| |||||| ||| ||||||| ||| ||| ||| ||||||||||    
T  4344311 tgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccat 4344237  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 4134524 - 4134626
Alignment:
Q  141 tgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagattttttga 240  Q
    ||||||||| || || |||||||||||||| ||| |||||| |||  || ||  |||||||||||||| ||| |||| | | |||||||| |||| ||||    
T  4134524 tgttttctagctgaatggaaactaaatttctttggtaaaagtttgtgggcatcaatgttaaaggaaattcattccaacacagccatctcaaatttcttga 4134623  T
Q  241 aag 243  Q
    |||    
T  4134624 aag 4134626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 8877191 - 8877066
Alignment:
Q  118 tttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaa 217  Q
    |||||| |||| |||||| ||||| ||||||||||| |  || || |||||| |||||||||||   | ||| ||| | |||||||||||| ||| ||||    
T  8877191 tttccacagaactttgacattgctattttctaactcgatagataccaaattttcttgataaaagtcggtaggtatgcaggttaaaggaaatgcattccaa 8877092  T
Q  218 gaaaaccatctcagattttttgaaag 243  Q
    || ||| ||||||||||||| |||||    
T  8877091 gataacaatctcagatttttggaaag 8877066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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