View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_107 (Length: 269)
Name: NF0784_low_107
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_107 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 8415992 - 8416068
Alignment:
| Q |
47 |
ataaatactaatgcatatatcataacaatgctcaaacataagttatatgagtacttaaagcaatggtaaaaaagaat |
123 |
Q |
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| T |
8415992 |
ataaatactaatgcatatatcataacaatgctcaaacataagttatatgagtacttaaagcaatggtaaaaaagaat |
8416068 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 8416155 - 8416213
Alignment:
| Q |
211 |
taaggagtaggatagaggagaaatgatggagataaaaatatacaatcattttcaatctt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8416155 |
taaggagtaggatagaggagaaatgatggagataaaaatatgcaatcattttcaatctt |
8416213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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